Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DYP entry

There are 2 chains in PDB entry 8DYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 25LEU 356
B
 GLU 8HIS 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8DYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
120 141Right-handed alpha
Helix 2
AA2
A
142 153Right-handed alpha
Helix 3
AA3
A
159 183Right-handed alpha
Helix 4
AA4
A
183 194Right-handed alpha
Helix 5
AA5
A
202 226Right-handed alpha
Helix 6
AA6
A
234 257Right-handed alpha
Helix 7
AA7
A
261 291Right-handed alpha
Helix 8
AA8
A
298 323Right-handed alpha
Helix 9
AA9
A
332 356Right-handed alpha
Helix 10
AB1
B
88 92Right-handed 310
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There are 4 sheets in PDB entry 8DYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
70 71anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
112 117parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
54 63anti-parallel
Strand 5
A
76 78anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 14first strand
Strand 2
B
118 122parallel
Strand 3
B
93 101anti-parallel
Strand 4
B
34 41anti-parallel
Strand 5
B
47 53anti-parallel
Strand 6
B
60 61anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
79 84anti-parallel
Strand 3
B
69 74anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il