Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DYU entry

There are 3 chains in PDB entry 8DYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1652	THR 4645
B	PRO 91	ARG 410
C	PRO 91	ARG 410

There are125 helices in PDB entry 8DYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1652	1656	Right-handed 310
Helix 2	AA2	A	1705	1725	Right-handed alpha
Helix 3	AA3	A	1726	1728	Right-handed 310
Helix 4	AA4	A	1734	1745	Right-handed alpha
Helix 5	AA5	A	1746	1768	Right-handed alpha
Helix 6	AA6	A	1776	1797	Right-handed alpha
Helix 7	AA7	A	1801	1828	Right-handed alpha
Helix 8	AA8	A	1835	1840	Right-handed alpha
Helix 9	AA9	A	1852	1855	Right-handed 310
Helix 10	AB1	A	1882	1898	Right-handed alpha
Helix 11	AB2	A	1911	1924	Right-handed alpha
Helix 12	AB3	A	1937	1952	Right-handed alpha
Helix 13	AB4	A	1964	1987	Right-handed alpha
Helix 14	AB5	A	2029	2034	Right-handed alpha
Helix 15	AB6	A	2045	2058	Right-handed alpha
Helix 16	AB7	A	2061	2080	Right-handed alpha
Helix 17	AB8	A	2089	2111	Right-handed alpha
Helix 18	AB9	A	2132	2145	Right-handed alpha
Helix 19	AC1	A	2146	2149	Right-handed 310
Helix 20	AC2	A	2153	2165	Right-handed alpha
Helix 21	AC3	A	2175	2187	Right-handed alpha
Helix 22	AC4	A	2200	2217	Right-handed alpha
Helix 23	AC5	A	2229	2245	Right-handed alpha
Helix 24	AC6	A	2260	2265	Right-handed alpha
Helix 25	AC7	A	2278	2290	Right-handed alpha
Helix 26	AC8	A	2293	2297	Right-handed 310
Helix 27	AC9	A	2308	2313	Right-handed alpha
Helix 28	AD1	A	2314	2316	Right-handed 310
Helix 29	AD2	A	2352	2357	Right-handed alpha
Helix 30	AD3	A	2370	2385	Right-handed alpha
Helix 31	AD4	A	2410	2424	Right-handed alpha
Helix 32	AD5	A	2425	2427	Right-handed 310
Helix 33	AD6	A	2432	2441	Right-handed alpha
Helix 34	AD7	A	2450	2476	Right-handed alpha
Helix 35	AD8	A	2482	2503	Right-handed alpha
Helix 36	AD9	A	2507	2522	Right-handed alpha
Helix 37	AE1	A	2533	2535	Right-handed 310
Helix 38	AE2	A	2549	2552	Right-handed 310
Helix 39	AE3	A	2558	2562	Right-handed 310
Helix 40	AE4	A	2571	2587	Right-handed alpha
Helix 41	AE5	A	2600	2611	Right-handed alpha
Helix 42	AE6	A	2627	2638	Right-handed alpha
Helix 43	AE7	A	2677	2690	Right-handed alpha
Helix 44	AE8	A	2724	2729	Right-handed alpha
Helix 45	AE9	A	2740	2756	Right-handed alpha
Helix 46	AF1	A	2759	2764	Right-handed 310
Helix 47	AF2	A	2765	2782	Right-handed alpha
Helix 48	AF3	A	2796	2811	Right-handed alpha
Helix 49	AF4	A	2817	2833	Right-handed alpha
Helix 50	AF5	A	2839	2858	Right-handed alpha
Helix 51	AF6	A	2885	2904	Right-handed alpha
Helix 52	AF7	A	2912	2928	Right-handed alpha
Helix 53	AF8	A	2944	2954	Right-handed alpha
Helix 54	AF9	A	2968	2985	Right-handed alpha
Helix 55	AG1	A	2995	3000	Right-handed alpha
Helix 56	AG2	A	3001	3015	Right-handed alpha
Helix 57	AG3	A	3023	3041	Right-handed alpha
Helix 58	AG4	A	3046	3062	Right-handed alpha
Helix 59	AG5	A	3071	3082	Right-handed alpha
Helix 60	AG6	A	3082	3088	Right-handed alpha
Helix 61	AG7	A	3098	3110	Right-handed alpha
Helix 62	AG8	A	3138	3165	Right-handed alpha
Helix 63	AG9	A	3172	3214	Right-handed alpha
Helix 64	AH1	A	3474	3482	Right-handed alpha
Helix 65	AH2	A	3482	3495	Right-handed alpha
Helix 66	AH3	A	3495	3502	Right-handed alpha
Helix 67	AH4	A	3502	3517	Right-handed alpha
Helix 68	AH5	A	3518	3520	Right-handed 310
Helix 69	AH6	A	3521	3539	Right-handed alpha
Helix 70	AH7	A	3548	3554	Right-handed alpha
Helix 71	AH8	A	3555	3564	Right-handed alpha
Helix 72	AH9	A	3570	3582	Right-handed alpha
Helix 73	AI1	A	3594	3604	Right-handed alpha
Helix 74	AI2	A	3605	3608	Right-handed 310
Helix 75	AI3	A	3618	3630	Right-handed alpha
Helix 76	AI4	A	3637	3641	Right-handed 310
Helix 77	AI5	A	3642	3644	Right-handed 310
Helix 78	AI6	A	3645	3651	Right-handed alpha
Helix 79	AI7	A	3689	3696	Right-handed alpha
Helix 80	AI8	A	3704	3721	Right-handed alpha
Helix 81	AI9	A	3721	3755	Right-handed alpha
Helix 82	AJ1	A	3764	3776	Right-handed alpha
Helix 83	AJ2	A	3778	3794	Right-handed alpha
Helix 84	AJ3	A	3794	3799	Right-handed alpha
Helix 85	AJ4	A	3801	3817	Right-handed alpha
Helix 86	AJ5	A	3828	3843	Right-handed alpha
Helix 87	AJ6	A	3851	3873	Right-handed alpha
Helix 88	AJ7	A	3874	3875	Right-handed 310
Helix 89	AJ8	A	3876	3878	Right-handed 310
Helix 90	AJ9	A	3879	3892	Right-handed alpha
Helix 91	AK1	A	3901	3906	Right-handed alpha
Helix 92	AK2	A	3906	3911	Right-handed alpha
Helix 93	AK3	A	3928	3939	Right-handed alpha
Helix 94	AK4	A	3944	3948	Right-handed 310
Helix 95	AK5	A	3949	3954	Right-handed alpha
Helix 96	AK6	A	3956	3962	Right-handed alpha
Helix 97	AK7	A	3981	3997	Right-handed alpha
Helix 98	AK8	A	4000	4013	Right-handed alpha
Helix 99	AK9	A	4014	4018	Right-handed 310
Helix 100	AL1	A	4026	4034	Right-handed alpha
Helix 101	AL2	A	4051	4063	Right-handed alpha
Helix 102	AL3	A	4073	4091	Right-handed alpha
Helix 103	AL4	A	4099	4101	Right-handed 310
Helix 104	AL5	A	4102	4115	Right-handed alpha
Helix 105	AL6	A	4135	4142	Right-handed alpha
Helix 106	AL7	A	4152	4164	Right-handed alpha
Helix 107	AL8	A	4165	4170	Right-handed alpha
Helix 108	AL9	A	4174	4196	Right-handed alpha
Helix 109	AM1	A	4208	4227	Right-handed alpha
Helix 110	AM2	A	4239	4250	Right-handed alpha
Helix 111	AM3	A	4258	4273	Right-handed alpha
Helix 112	AM4	A	4274	4279	Right-handed 310
Helix 113	AM5	A	4301	4311	Right-handed alpha
Helix 114	AM6	A	4317	4321	Right-handed 310
Helix 115	AM7	A	4326	4347	Right-handed alpha
Helix 116	AM8	A	4380	4395	Right-handed alpha
Helix 117	AM9	A	4407	4440	Right-handed alpha
Helix 118	AN1	A	4448	4458	Right-handed alpha
Helix 119	AN2	A	4474	4498	Right-handed alpha
Helix 120	AN3	A	4502	4507	Right-handed 310
Helix 121	AN4	A	4516	4533	Right-handed alpha
Helix 122	AN5	A	4631	4639	Right-handed alpha
Helix 123	AN6	B	288	297	Right-handed alpha
Helix 124	AN7	C	286	288	Right-handed 310
Helix 125	AN8	C	289	297	Right-handed alpha

There are 31 sheets in PDB entry 8DYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1844	1846	first strand
Strand 2	A	1857	1860	anti-parallel
Strand 3	A	1865	1866	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1901	1905	first strand
Strand 2	A	2036	2040	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1927	1930	first strand
Strand 2	A	1954	1957	parallel
Strand 3	A	2013	2016	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1999	2000	first strand
Strand 2	A	2005	2006	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2249	2254	first strand
Strand 2	A	2298	2303	parallel
Strand 3	A	2340	2345	parallel
Strand 4	A	2219	2223	parallel
Strand 5	A	2360	2363	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2266	2269	first strand
Strand 2	A	2274	2277	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2324	2326	first strand
Strand 2	A	2332	2334	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2537	2539	first strand
Strand 2	A	2545	2547	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2615	2620	first strand
Strand 2	A	2658	2663	parallel
Strand 3	A	2706	2712	parallel
Strand 4	A	2591	2594	parallel
Strand 5	A	2733	2734	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2639	2644	first strand
Strand 2	A	2647	2652	anti-parallel
Strand 3	A	2699	2703	parallel
Strand 4	A	2691	2694	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2873	2874	first strand
Strand 2	A	2882	2883	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2957	2959	first strand
Strand 2	A	2990	2994	parallel
Strand 3	A	3063	3068	parallel
Strand 4	A	2933	2937	parallel
Strand 5	A	3090	3095	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3610	3613	first strand
Strand 2	A	3633	3636	parallel
Strand 3	A	3677	3681	parallel
Strand 4	A	3587	3590	parallel
Strand 5	A	3697	3700	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3654	3655	first strand
Strand 2	A	3660	3663	anti-parallel
Strand 3	A	3668	3670	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4066	4070	first strand
Strand 2	A	4093	4097	parallel
Strand 3	A	4123	4129	parallel
Strand 4	A	4041	4045	parallel
Strand 5	A	4143	4147	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4509	4510	first strand
Strand 2	A	4559	4561	parallel
Strand 3	A	4588	4591	anti-parallel
Strand 4	A	4542	4545	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4564	4566	first strand
Strand 2	A	4641	4643	anti-parallel
Strand 3	A	4604	4610	parallel
Strand 4	A	4620	4626	anti-parallel
Strand 5	A	4574	4576	parallel
Strand 6	A	4569	4570	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	104	first strand
Strand 2	B	404	410	anti-parallel
Strand 3	B	394	399	anti-parallel
Strand 4	B	383	388	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	116	first strand
Strand 2	B	123	127	anti-parallel
Strand 3	B	133	136	anti-parallel
Strand 4	B	141	145	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	158	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	173	178	anti-parallel
Strand 4	B	183	189	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	200	first strand
Strand 2	B	206	211	anti-parallel
Strand 3	B	216	220	anti-parallel
Strand 4	B	226	230	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	242	first strand
Strand 2	B	248	253	anti-parallel
Strand 3	B	258	262	anti-parallel
Strand 4	B	270	272	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	284	first strand
Strand 2	B	310	315	anti-parallel
Strand 3	B	319	324	anti-parallel
Strand 4	B	330	335	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	346	first strand
Strand 2	B	353	357	anti-parallel
Strand 3	B	361	366	anti-parallel
Strand 4	B	371	377	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	104	first strand
Strand 2	C	403	410	anti-parallel
Strand 3	C	394	399	anti-parallel
Strand 4	C	385	388	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	123	127	anti-parallel
Strand 3	C	132	135	anti-parallel
Strand 4	C	142	146	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	158	first strand
Strand 2	C	164	169	anti-parallel
Strand 3	C	174	178	anti-parallel
Strand 4	C	183	188	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	200	first strand
Strand 2	C	206	211	anti-parallel
Strand 3	C	215	220	anti-parallel
Strand 4	C	226	231	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	242	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	258	262	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	310	315	anti-parallel
Strand 3	C	319	324	anti-parallel
Strand 4	C	330	335	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	346	first strand
Strand 2	C	353	357	anti-parallel
Strand 3	C	362	366	anti-parallel
Strand 4	C	371	376	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DYU