Analysis of interatomic Contacts of Structural Units in PDB entry:
8DZE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DZE entry

There are 6 chains in PDB entry 8DZE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 107	ILE 534
B	VAL 107	ILE 534
C	VAL 107	ILE 534
D	VAL 107	ILE 534
E	VAL 107	ILE 534
F	VAL 107	ILE 534

There are102 helices in PDB entry 8DZE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	122	Right-handed alpha
Helix 2	AA2	A	153	166	Right-handed alpha
Helix 3	AA3	A	238	251	Right-handed alpha
Helix 4	AA4	A	261	264	Right-handed 310
Helix 5	AA5	A	265	282	Right-handed alpha
Helix 6	AA6	A	312	329	Right-handed alpha
Helix 7	AA7	A	341	355	Right-handed alpha
Helix 8	AA8	A	368	376	Right-handed alpha
Helix 9	AA9	A	380	385	Right-handed alpha
Helix 10	AB1	A	409	416	Right-handed alpha
Helix 11	AB2	A	421	429	Right-handed alpha
Helix 12	AB3	A	463	472	Right-handed alpha
Helix 13	AB4	A	478	485	Right-handed alpha
Helix 14	AB5	A	490	501	Right-handed alpha
Helix 15	AB6	A	505	513	Right-handed alpha
Helix 16	AB7	A	515	519	Right-handed 310
Helix 17	AB8	A	520	533	Right-handed alpha
Helix 18	AB9	B	108	122	Right-handed alpha
Helix 19	AC1	B	153	166	Right-handed alpha
Helix 20	AC2	B	238	251	Right-handed alpha
Helix 21	AC3	B	261	264	Right-handed 310
Helix 22	AC4	B	265	282	Right-handed alpha
Helix 23	AC5	B	312	329	Right-handed alpha
Helix 24	AC6	B	341	355	Right-handed alpha
Helix 25	AC7	B	368	376	Right-handed alpha
Helix 26	AC8	B	380	385	Right-handed alpha
Helix 27	AC9	B	409	416	Right-handed alpha
Helix 28	AD1	B	421	429	Right-handed alpha
Helix 29	AD2	B	463	472	Right-handed alpha
Helix 30	AD3	B	478	485	Right-handed alpha
Helix 31	AD4	B	490	501	Right-handed alpha
Helix 32	AD5	B	505	513	Right-handed alpha
Helix 33	AD6	B	515	519	Right-handed 310
Helix 34	AD7	B	520	533	Right-handed alpha
Helix 35	AD8	C	108	122	Right-handed alpha
Helix 36	AD9	C	153	166	Right-handed alpha
Helix 37	AE1	C	238	251	Right-handed alpha
Helix 38	AE2	C	261	264	Right-handed 310
Helix 39	AE3	C	265	282	Right-handed alpha
Helix 40	AE4	C	312	329	Right-handed alpha
Helix 41	AE5	C	341	355	Right-handed alpha
Helix 42	AE6	C	368	376	Right-handed alpha
Helix 43	AE7	C	380	385	Right-handed alpha
Helix 44	AE8	C	409	416	Right-handed alpha
Helix 45	AE9	C	421	429	Right-handed alpha
Helix 46	AF1	C	463	472	Right-handed alpha
Helix 47	AF2	C	478	485	Right-handed alpha
Helix 48	AF3	C	490	501	Right-handed alpha
Helix 49	AF4	C	505	513	Right-handed alpha
Helix 50	AF5	C	515	519	Right-handed 310
Helix 51	AF6	C	520	533	Right-handed alpha
Helix 52	AF7	D	108	122	Right-handed alpha
Helix 53	AF8	D	153	166	Right-handed alpha
Helix 54	AF9	D	238	251	Right-handed alpha
Helix 55	AG1	D	261	264	Right-handed 310
Helix 56	AG2	D	265	282	Right-handed alpha
Helix 57	AG3	D	312	329	Right-handed alpha
Helix 58	AG4	D	341	355	Right-handed alpha
Helix 59	AG5	D	368	376	Right-handed alpha
Helix 60	AG6	D	380	385	Right-handed alpha
Helix 61	AG7	D	409	416	Right-handed alpha
Helix 62	AG8	D	421	429	Right-handed alpha
Helix 63	AG9	D	463	472	Right-handed alpha
Helix 64	AH1	D	478	485	Right-handed alpha
Helix 65	AH2	D	490	501	Right-handed alpha
Helix 66	AH3	D	505	513	Right-handed alpha
Helix 67	AH4	D	515	519	Right-handed 310
Helix 68	AH5	D	520	533	Right-handed alpha
Helix 69	AH6	E	108	122	Right-handed alpha
Helix 70	AH7	E	153	166	Right-handed alpha
Helix 71	AH8	E	238	251	Right-handed alpha
Helix 72	AH9	E	261	264	Right-handed 310
Helix 73	AI1	E	265	282	Right-handed alpha
Helix 74	AI2	E	312	329	Right-handed alpha
Helix 75	AI3	E	341	355	Right-handed alpha
Helix 76	AI4	E	368	376	Right-handed alpha
Helix 77	AI5	E	380	385	Right-handed alpha
Helix 78	AI6	E	409	416	Right-handed alpha
Helix 79	AI7	E	421	429	Right-handed alpha
Helix 80	AI8	E	463	472	Right-handed alpha
Helix 81	AI9	E	478	485	Right-handed alpha
Helix 82	AJ1	E	490	501	Right-handed alpha
Helix 83	AJ2	E	505	513	Right-handed alpha
Helix 84	AJ3	E	515	519	Right-handed 310
Helix 85	AJ4	E	520	533	Right-handed alpha
Helix 86	AJ5	F	108	122	Right-handed alpha
Helix 87	AJ6	F	153	166	Right-handed alpha
Helix 88	AJ7	F	238	251	Right-handed alpha
Helix 89	AJ8	F	261	264	Right-handed 310
Helix 90	AJ9	F	265	282	Right-handed alpha
Helix 91	AK1	F	312	329	Right-handed alpha
Helix 92	AK2	F	341	355	Right-handed alpha
Helix 93	AK3	F	368	376	Right-handed alpha
Helix 94	AK4	F	380	385	Right-handed alpha
Helix 95	AK5	F	409	416	Right-handed alpha
Helix 96	AK6	F	421	429	Right-handed alpha
Helix 97	AK7	F	463	472	Right-handed alpha
Helix 98	AK8	F	478	485	Right-handed alpha
Helix 99	AK9	F	490	501	Right-handed alpha
Helix 100	AL1	F	505	513	Right-handed alpha
Helix 101	AL2	F	515	519	Right-handed 310
Helix 102	AL3	F	520	533	Right-handed alpha

There are 30 sheets in PDB entry 8DZE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	152	first strand
Strand 2	A	134	141	anti-parallel
Strand 3	A	126	130	anti-parallel
Strand 4	A	212	216	anti-parallel
Strand 5	A	197	206	anti-parallel
Strand 6	A	180	185	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	152	first strand
Strand 2	A	134	141	anti-parallel
Strand 3	A	126	130	anti-parallel
Strand 4	A	212	216	anti-parallel
Strand 5	A	197	206	anti-parallel
Strand 6	A	219	220	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	361	first strand
Strand 2	A	254	259	parallel
Strand 3	A	390	402	parallel
Strand 4	A	450	460	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	A	302	304	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	408	first strand
Strand 2	A	437	438	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	152	first strand
Strand 2	B	134	141	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	212	216	anti-parallel
Strand 5	B	197	206	anti-parallel
Strand 6	B	180	185	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	152	first strand
Strand 2	B	134	141	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	212	216	anti-parallel
Strand 5	B	197	206	anti-parallel
Strand 6	B	219	220	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	361	first strand
Strand 2	B	254	259	parallel
Strand 3	B	390	402	parallel
Strand 4	B	450	460	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	290	first strand
Strand 2	B	302	304	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	407	408	first strand
Strand 2	B	437	438	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	152	first strand
Strand 2	C	134	141	anti-parallel
Strand 3	C	126	130	anti-parallel
Strand 4	C	212	216	anti-parallel
Strand 5	C	197	206	anti-parallel
Strand 6	C	180	185	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	152	first strand
Strand 2	C	134	141	anti-parallel
Strand 3	C	126	130	anti-parallel
Strand 4	C	212	216	anti-parallel
Strand 5	C	197	206	anti-parallel
Strand 6	C	219	220	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	361	first strand
Strand 2	C	254	259	parallel
Strand 3	C	390	402	parallel
Strand 4	C	450	460	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	288	290	first strand
Strand 2	C	302	304	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	407	408	first strand
Strand 2	C	437	438	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	152	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	126	130	anti-parallel
Strand 4	D	212	216	anti-parallel
Strand 5	D	197	206	anti-parallel
Strand 6	D	180	185	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	152	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	126	130	anti-parallel
Strand 4	D	212	216	anti-parallel
Strand 5	D	197	206	anti-parallel
Strand 6	D	219	220	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	361	first strand
Strand 2	D	254	259	parallel
Strand 3	D	390	402	parallel
Strand 4	D	450	460	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	290	first strand
Strand 2	D	302	304	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	407	408	first strand
Strand 2	D	437	438	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	152	first strand
Strand 2	E	134	141	anti-parallel
Strand 3	E	126	130	anti-parallel
Strand 4	E	212	216	anti-parallel
Strand 5	E	197	206	anti-parallel
Strand 6	E	180	185	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	152	first strand
Strand 2	E	134	141	anti-parallel
Strand 3	E	126	130	anti-parallel
Strand 4	E	212	216	anti-parallel
Strand 5	E	197	206	anti-parallel
Strand 6	E	219	220	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	357	361	first strand
Strand 2	E	254	259	parallel
Strand 3	E	390	402	parallel
Strand 4	E	450	460	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	288	290	first strand
Strand 2	E	302	304	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	407	408	first strand
Strand 2	E	437	438	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	152	first strand
Strand 2	F	134	141	anti-parallel
Strand 3	F	126	130	anti-parallel
Strand 4	F	212	216	anti-parallel
Strand 5	F	197	206	anti-parallel
Strand 6	F	180	185	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	152	first strand
Strand 2	F	134	141	anti-parallel
Strand 3	F	126	130	anti-parallel
Strand 4	F	212	216	anti-parallel
Strand 5	F	197	206	anti-parallel
Strand 6	F	219	220	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	357	361	first strand
Strand 2	F	254	259	parallel
Strand 3	F	390	402	parallel
Strand 4	F	450	460	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	290	first strand
Strand 2	F	302	304	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	407	408	first strand
Strand 2	F	437	438	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DZE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DZE