Analysis of interatomic Contacts of Structural Units in PDB entry:
8DZG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DZG entry

There are 6 chains in PDB entry 8DZG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 107	ILE 534
B	VAL 107	ILE 534
C	VAL 107	ILE 534
D	VAL 107	ILE 534
E	VAL 107	ILE 534
F	VAL 107	ILE 534

There are 96 helices in PDB entry 8DZG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	122	Right-handed alpha
Helix 2	AA2	A	153	166	Right-handed alpha
Helix 3	AA3	A	238	251	Right-handed alpha
Helix 4	AA4	A	265	281	Right-handed alpha
Helix 5	AA5	A	314	328	Right-handed alpha
Helix 6	AA6	A	341	353	Right-handed alpha
Helix 7	AA7	A	369	378	Right-handed alpha
Helix 8	AA8	A	380	386	Right-handed alpha
Helix 9	AA9	A	409	417	Right-handed alpha
Helix 10	AB1	A	421	429	Right-handed alpha
Helix 11	AB2	A	463	472	Right-handed alpha
Helix 12	AB3	A	474	485	Right-handed alpha
Helix 13	AB4	A	490	502	Right-handed alpha
Helix 14	AB5	A	505	513	Right-handed alpha
Helix 15	AB6	A	515	519	Right-handed 310
Helix 16	AB7	A	520	534	Right-handed alpha
Helix 17	AB8	B	108	122	Right-handed alpha
Helix 18	AB9	B	153	166	Right-handed alpha
Helix 19	AC1	B	238	251	Right-handed alpha
Helix 20	AC2	B	265	281	Right-handed alpha
Helix 21	AC3	B	314	328	Right-handed alpha
Helix 22	AC4	B	341	353	Right-handed alpha
Helix 23	AC5	B	369	378	Right-handed alpha
Helix 24	AC6	B	380	386	Right-handed alpha
Helix 25	AC7	B	409	417	Right-handed alpha
Helix 26	AC8	B	421	429	Right-handed alpha
Helix 27	AC9	B	463	472	Right-handed alpha
Helix 28	AD1	B	474	485	Right-handed alpha
Helix 29	AD2	B	490	502	Right-handed alpha
Helix 30	AD3	B	505	513	Right-handed alpha
Helix 31	AD4	B	515	519	Right-handed 310
Helix 32	AD5	B	520	534	Right-handed alpha
Helix 33	AD6	C	108	122	Right-handed alpha
Helix 34	AD7	C	153	166	Right-handed alpha
Helix 35	AD8	C	238	251	Right-handed alpha
Helix 36	AD9	C	265	281	Right-handed alpha
Helix 37	AE1	C	314	328	Right-handed alpha
Helix 38	AE2	C	341	353	Right-handed alpha
Helix 39	AE3	C	369	378	Right-handed alpha
Helix 40	AE4	C	380	386	Right-handed alpha
Helix 41	AE5	C	409	417	Right-handed alpha
Helix 42	AE6	C	421	429	Right-handed alpha
Helix 43	AE7	C	463	472	Right-handed alpha
Helix 44	AE8	C	474	485	Right-handed alpha
Helix 45	AE9	C	490	502	Right-handed alpha
Helix 46	AF1	C	505	513	Right-handed alpha
Helix 47	AF2	C	515	519	Right-handed 310
Helix 48	AF3	C	520	534	Right-handed alpha
Helix 49	AF4	D	108	122	Right-handed alpha
Helix 50	AF5	D	153	166	Right-handed alpha
Helix 51	AF6	D	238	251	Right-handed alpha
Helix 52	AF7	D	265	281	Right-handed alpha
Helix 53	AF8	D	314	328	Right-handed alpha
Helix 54	AF9	D	341	353	Right-handed alpha
Helix 55	AG1	D	369	378	Right-handed alpha
Helix 56	AG2	D	380	386	Right-handed alpha
Helix 57	AG3	D	409	417	Right-handed alpha
Helix 58	AG4	D	421	429	Right-handed alpha
Helix 59	AG5	D	463	472	Right-handed alpha
Helix 60	AG6	D	474	485	Right-handed alpha
Helix 61	AG7	D	490	502	Right-handed alpha
Helix 62	AG8	D	505	513	Right-handed alpha
Helix 63	AG9	D	515	519	Right-handed 310
Helix 64	AH1	D	520	534	Right-handed alpha
Helix 65	AH2	E	108	122	Right-handed alpha
Helix 66	AH3	E	153	166	Right-handed alpha
Helix 67	AH4	E	238	251	Right-handed alpha
Helix 68	AH5	E	265	281	Right-handed alpha
Helix 69	AH6	E	314	328	Right-handed alpha
Helix 70	AH7	E	341	353	Right-handed alpha
Helix 71	AH8	E	369	378	Right-handed alpha
Helix 72	AH9	E	380	386	Right-handed alpha
Helix 73	AI1	E	409	417	Right-handed alpha
Helix 74	AI2	E	421	429	Right-handed alpha
Helix 75	AI3	E	463	472	Right-handed alpha
Helix 76	AI4	E	474	485	Right-handed alpha
Helix 77	AI5	E	490	502	Right-handed alpha
Helix 78	AI6	E	505	513	Right-handed alpha
Helix 79	AI7	E	515	519	Right-handed 310
Helix 80	AI8	E	520	534	Right-handed alpha
Helix 81	AI9	F	108	122	Right-handed alpha
Helix 82	AJ1	F	153	166	Right-handed alpha
Helix 83	AJ2	F	238	251	Right-handed alpha
Helix 84	AJ3	F	265	281	Right-handed alpha
Helix 85	AJ4	F	314	328	Right-handed alpha
Helix 86	AJ5	F	341	353	Right-handed alpha
Helix 87	AJ6	F	369	378	Right-handed alpha
Helix 88	AJ7	F	380	386	Right-handed alpha
Helix 89	AJ8	F	409	417	Right-handed alpha
Helix 90	AJ9	F	421	429	Right-handed alpha
Helix 91	AK1	F	463	472	Right-handed alpha
Helix 92	AK2	F	474	485	Right-handed alpha
Helix 93	AK3	F	490	502	Right-handed alpha
Helix 94	AK4	F	505	513	Right-handed alpha
Helix 95	AK5	F	515	519	Right-handed 310
Helix 96	AK6	F	520	534	Right-handed alpha

There are 12 sheets in PDB entry 8DZG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	152	first strand
Strand 2	A	134	141	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	212	220	anti-parallel
Strand 5	A	197	206	anti-parallel
Strand 6	A	180	185	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	287	290	parallel
Strand 3	A	333	336	parallel
Strand 4	A	357	362	parallel
Strand 5	A	254	259	parallel
Strand 6	A	390	400	parallel
Strand 7	A	453	460	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	152	first strand
Strand 2	B	134	141	anti-parallel
Strand 3	B	125	130	anti-parallel
Strand 4	B	212	220	anti-parallel
Strand 5	B	197	206	anti-parallel
Strand 6	B	180	185	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	287	290	parallel
Strand 3	B	333	336	parallel
Strand 4	B	357	362	parallel
Strand 5	B	254	259	parallel
Strand 6	B	390	400	parallel
Strand 7	B	453	460	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	152	first strand
Strand 2	C	134	141	anti-parallel
Strand 3	C	125	130	anti-parallel
Strand 4	C	212	220	anti-parallel
Strand 5	C	197	206	anti-parallel
Strand 6	C	180	185	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	287	290	parallel
Strand 3	C	333	336	parallel
Strand 4	C	357	362	parallel
Strand 5	C	254	259	parallel
Strand 6	C	390	400	parallel
Strand 7	C	453	460	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	152	first strand
Strand 2	D	134	141	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	212	220	anti-parallel
Strand 5	D	197	206	anti-parallel
Strand 6	D	180	185	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	287	290	parallel
Strand 3	D	333	336	parallel
Strand 4	D	357	362	parallel
Strand 5	D	254	259	parallel
Strand 6	D	390	400	parallel
Strand 7	D	453	460	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	152	first strand
Strand 2	E	134	141	anti-parallel
Strand 3	E	125	130	anti-parallel
Strand 4	E	212	220	anti-parallel
Strand 5	E	197	206	anti-parallel
Strand 6	E	180	185	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	303	304	first strand
Strand 2	E	287	290	parallel
Strand 3	E	333	336	parallel
Strand 4	E	357	362	parallel
Strand 5	E	254	259	parallel
Strand 6	E	390	400	parallel
Strand 7	E	453	460	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	152	first strand
Strand 2	F	134	141	anti-parallel
Strand 3	F	125	130	anti-parallel
Strand 4	F	212	220	anti-parallel
Strand 5	F	197	206	anti-parallel
Strand 6	F	180	185	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	303	304	first strand
Strand 2	F	287	290	parallel
Strand 3	F	333	336	parallel
Strand 4	F	357	362	parallel
Strand 5	F	254	259	parallel
Strand 6	F	390	400	parallel
Strand 7	F	453	460	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DZG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DZG