Analysis of interatomic Contacts of Structural Units in PDB entry:
8DZJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DZJ entry

There are 5 chains in PDB entry 8DZJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 0LYS 422
B
 LYS 3GLU 210
C
 A 12 G 38
D
 C 5 G 14
E
 U 5 U 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8DZJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 57Right-handed alpha
Helix 2
AA2
A
61 66Right-handed alpha
Helix 3
AA3
A
70 80Right-handed alpha
Helix 4
AA4
A
87 105Right-handed alpha
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
150 157Right-handed alpha
Helix 8
AA8
A
170 182Right-handed alpha
Helix 9
AA9
A
247 270Right-handed alpha
Helix 10
AB1
A
272 278Right-handed alpha
Helix 11
AB2
A
284 316Right-handed alpha
Helix 12
AB3
A
325 330Right-handed alpha
Helix 13
AB4
A
341 357Right-handed alpha
Helix 14
AB5
A
400 410Right-handed alpha
Helix 15
AB6
A
412 422Right-handed alpha
Helix 16
AB7
B
16 46Right-handed alpha
Helix 17
AB8
B
70 80Right-handed alpha
Helix 18
AB9
B
87 111Right-handed alpha
Helix 19
AC1
B
128 130Right-handed 310
Helix 20
AC2
B
150 158Right-handed alpha
Helix 21
AC3
B
171 183Right-handed alpha
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There are 5 sheets in PDB entry 8DZJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
125 127first strand
Strand 2
A
186 195anti-parallel
Strand 3
A
200 209anti-parallel
Strand 4
A
1 13anti-parallel
Strand 5
A
163 168anti-parallel
Strand 6
A
142 146anti-parallel
Strand 7
A
132 136anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 245first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
320 324parallel
Strand 5
A
359 363parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
396 399anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
200 208anti-parallel
Strand 4
B
4 12anti-parallel
Strand 5
B
162 167anti-parallel
Strand 6
B
142 147anti-parallel
Strand 7
B
132 136anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 127first strand
Strand 2
B
190 195anti-parallel
Strand 3
B
200 208anti-parallel
Strand 4
B
186 187anti-parallel
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