Analysis of interatomic Contacts of Structural Units in PDB entry:
8E04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E04 entry

There is 1 chain in PDB entry 8E04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 381	LEU 2007

There are 50 helices in PDB entry 8E04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	396	402	Right-handed alpha
Helix 2	AA2	A	443	448	Right-handed alpha
Helix 3	AA3	A	467	471	Right-handed 310
Helix 4	AA4	A	490	494	Right-handed 310
Helix 5	AA5	A	544	549	Right-handed 310
Helix 6	AA6	A	564	570	Right-handed 310
Helix 7	AA7	A	588	594	Right-handed 310
Helix 8	AA8	A	611	618	Right-handed alpha
Helix 9	AA9	A	618	631	Right-handed alpha
Helix 10	AB1	A	650	661	Right-handed alpha
Helix 11	AB2	A	703	707	Right-handed 310
Helix 12	AB3	A	709	714	Right-handed 310
Helix 13	AB4	A	729	747	Right-handed alpha
Helix 14	AB5	A	758	762	Right-handed 310
Helix 15	AB6	A	769	783	Right-handed alpha
Helix 16	AB7	A	797	799	Right-handed 310
Helix 17	AB8	A	811	826	Right-handed alpha
Helix 18	AB9	A	844	865	Right-handed alpha
Helix 19	AC1	A	871	882	Right-handed alpha
Helix 20	AC2	A	889	903	Right-handed alpha
Helix 21	AC3	A	923	936	Right-handed alpha
Helix 22	AC4	A	951	958	Right-handed alpha
Helix 23	AC5	A	959	962	Right-handed 310
Helix 24	AC6	A	964	966	Right-handed 310
Helix 25	AC7	A	967	978	Right-handed alpha
Helix 26	AC8	A	992	995	Right-handed 310
Helix 27	AC9	A	1026	1043	Right-handed alpha
Helix 28	AD1	A	1128	1144	Right-handed alpha
Helix 29	AD2	A	1145	1150	Right-handed 310
Helix 30	AD3	A	1190	1198	Right-handed alpha
Helix 31	AD4	A	1216	1218	Right-handed 310
Helix 32	AD5	A	1228	1232	Right-handed 310
Helix 33	AD6	A	1234	1236	Right-handed 310
Helix 34	AD7	A	1243	1245	Right-handed 310
Helix 35	AD8	A	1287	1312	Right-handed alpha
Helix 36	AD9	A	1341	1346	Right-handed alpha
Helix 37	AE1	A	1359	1380	Right-handed alpha
Helix 38	AE2	A	1388	1390	Right-handed 310
Helix 39	AE3	A	1442	1460	Right-handed alpha
Helix 40	AE4	A	1473	1479	Right-handed 310
Helix 41	AE5	A	1486	1491	Right-handed alpha
Helix 42	AE6	A	1492	1503	Right-handed alpha
Helix 43	AE7	A	1506	1510	Right-handed 310
Helix 44	AE8	A	1512	1521	Right-handed alpha
Helix 45	AE9	A	1522	1527	Right-handed alpha
Helix 46	AF1	A	1556	1559	Right-handed 310
Helix 47	AF2	A	1670	1678	Right-handed alpha
Helix 48	AF3	A	1685	1689	Right-handed 310
Helix 49	AF4	A	1950	1957	Right-handed 310
Helix 50	AF5	A	1990	2007	Right-handed alpha

There are 18 sheets in PDB entry 8E04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	384	386	first strand
Strand 2	A	408	410	parallel
Strand 3	A	429	431	parallel
Strand 4	A	454	456	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	477	479	first strand
Strand 2	A	501	503	parallel
Strand 3	A	552	554	parallel
Strand 4	A	575	577	parallel
Strand 5	A	599	601	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	636	first strand
Strand 2	A	841	843	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	681	first strand
Strand 2	A	692	700	anti-parallel
Strand 3	A	638	644	parallel
Strand 4	A	719	725	parallel
Strand 5	A	751	757	parallel
Strand 6	A	801	803	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	950	first strand
Strand 2	A	988	990	anti-parallel
Strand 3	A	982	984	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1086	first strand
Strand 2	A	1089	1094	anti-parallel
Strand 3	A	1097	1108	anti-parallel
Strand 4	A	1111	1122	anti-parallel
Strand 5	A	1013	1020	anti-parallel
Strand 6	A	1159	1164	anti-parallel
Strand 7	A	1187	1189	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1203	first strand
Strand 2	A	1213	1214	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1238	1239	first strand
Strand 2	A	1256	1262	anti-parallel
Strand 3	A	1247	1250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1238	1239	first strand
Strand 2	A	1256	1262	anti-parallel
Strand 3	A	1265	1271	anti-parallel
Strand 4	A	1331	1335	anti-parallel
Strand 5	A	1322	1326	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1392	1394	first strand
Strand 2	A	1405	1407	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1528	1536	first strand
Strand 2	A	1980	1987	anti-parallel
Strand 3	A	1969	1975	anti-parallel
Strand 4	A	1958	1966	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1539	1542	first strand
Strand 2	A	1550	1554	anti-parallel
Strand 3	A	1561	1565	anti-parallel
Strand 4	A	1574	1578	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1584	1590	first strand
Strand 2	A	1593	1598	anti-parallel
Strand 3	A	1602	1607	anti-parallel
Strand 4	A	1619	1622	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1633	first strand
Strand 2	A	1641	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1661	1662	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1633	first strand
Strand 2	A	1641	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1667	1669	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1696	1699	first strand
Strand 2	A	1704	1709	anti-parallel
Strand 3	A	1712	1717	anti-parallel
Strand 4	A	1723	1727	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1736	1741	first strand
Strand 2	A	1750	1755	anti-parallel
Strand 3	A	1760	1765	anti-parallel
Strand 4	A	1771	1776	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1786	1788	first strand
Strand 2	A	1939	1948	anti-parallel
Strand 3	A	1928	1936	anti-parallel
Strand 4	A	1918	1922	anti-parallel
Strand 5	A	1913	1915	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E04

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E04