Analysis of interatomic Contacts of Structural Units in PDB entry:
8E05

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E05 entry

There are 2 chains in PDB entry 8E05 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 51	LEU 2007
B	ARG 51	LEU 2007

There are142 helices in PDB entry 8E05. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	64	Right-handed alpha
Helix 2	AA2	A	66	81	Right-handed alpha
Helix 3	AA3	A	83	98	Right-handed alpha
Helix 4	AA4	A	99	109	Right-handed alpha
Helix 5	AA5	A	122	130	Right-handed alpha
Helix 6	AA6	A	132	142	Right-handed alpha
Helix 7	AA7	A	149	164	Right-handed alpha
Helix 8	AA8	A	165	176	Right-handed alpha
Helix 9	AA9	A	192	195	Right-handed 310
Helix 10	AB1	A	196	204	Right-handed alpha
Helix 11	AB2	A	206	216	Right-handed alpha
Helix 12	AB3	A	221	228	Right-handed alpha
Helix 13	AB4	A	228	239	Right-handed alpha
Helix 14	AB5	A	269	274	Right-handed alpha
Helix 15	AB6	A	275	277	Right-handed 310
Helix 16	AB7	A	295	300	Right-handed alpha
Helix 17	AB8	A	322	326	Right-handed 310
Helix 18	AB9	A	345	351	Right-handed 310
Helix 19	AC1	A	396	403	Right-handed alpha
Helix 20	AC2	A	443	448	Right-handed alpha
Helix 21	AC3	A	466	471	Right-handed alpha
Helix 22	AC4	A	490	494	Right-handed 310
Helix 23	AC5	A	543	548	Right-handed 310
Helix 24	AC6	A	564	570	Right-handed 310
Helix 25	AC7	A	588	594	Right-handed 310
Helix 26	AC8	A	611	618	Right-handed alpha
Helix 27	AC9	A	618	631	Right-handed alpha
Helix 28	AD1	A	650	661	Right-handed alpha
Helix 29	AD2	A	703	705	Right-handed 310
Helix 30	AD3	A	706	711	Right-handed alpha
Helix 31	AD4	A	712	714	Right-handed 310
Helix 32	AD5	A	729	745	Right-handed alpha
Helix 33	AD6	A	758	762	Right-handed 310
Helix 34	AD7	A	763	781	Right-handed alpha
Helix 35	AD8	A	797	799	Right-handed 310
Helix 36	AD9	A	811	825	Right-handed alpha
Helix 37	AE1	A	844	865	Right-handed alpha
Helix 38	AE2	A	872	882	Right-handed alpha
Helix 39	AE3	A	889	903	Right-handed alpha
Helix 40	AE4	A	912	916	Right-handed 310
Helix 41	AE5	A	923	937	Right-handed alpha
Helix 42	AE6	A	951	958	Right-handed alpha
Helix 43	AE7	A	967	978	Right-handed alpha
Helix 44	AE8	A	992	995	Right-handed 310
Helix 45	AE9	A	1026	1047	Right-handed alpha
Helix 46	AF1	A	1107	1111	Right-handed 310
Helix 47	AF2	A	1127	1145	Right-handed alpha
Helix 48	AF3	A	1146	1149	Right-handed 310
Helix 49	AF4	A	1165	1173	Right-handed alpha
Helix 50	AF5	A	1190	1200	Right-handed alpha
Helix 51	AF6	A	1219	1223	Right-handed 310
Helix 52	AF7	A	1228	1232	Right-handed 310
Helix 53	AF8	A	1234	1238	Right-handed 310
Helix 54	AF9	A	1243	1245	Right-handed 310
Helix 55	AG1	A	1286	1313	Right-handed alpha
Helix 56	AG2	A	1341	1351	Right-handed alpha
Helix 57	AG3	A	1359	1380	Right-handed alpha
Helix 58	AG4	A	1442	1460	Right-handed alpha
Helix 59	AG5	A	1468	1478	Right-handed alpha
Helix 60	AG6	A	1486	1491	Right-handed alpha
Helix 61	AG7	A	1492	1503	Right-handed alpha
Helix 62	AG8	A	1506	1510	Right-handed 310
Helix 63	AG9	A	1512	1521	Right-handed alpha
Helix 64	AH1	A	1522	1527	Right-handed alpha
Helix 65	AH2	A	1556	1559	Right-handed 310
Helix 66	AH3	A	1609	1611	Right-handed 310
Helix 67	AH4	A	1670	1678	Right-handed alpha
Helix 68	AH5	A	1685	1689	Right-handed 310
Helix 69	AH6	A	1904	1908	Right-handed 310
Helix 70	AH7	A	1950	1957	Right-handed 310
Helix 71	AH8	A	1990	2007	Right-handed alpha
Helix 72	AH9	B	52	64	Right-handed alpha
Helix 73	AI1	B	66	81	Right-handed alpha
Helix 74	AI2	B	83	98	Right-handed alpha
Helix 75	AI3	B	99	109	Right-handed alpha
Helix 76	AI4	B	122	130	Right-handed alpha
Helix 77	AI5	B	132	142	Right-handed alpha
Helix 78	AI6	B	149	164	Right-handed alpha
Helix 79	AI7	B	165	176	Right-handed alpha
Helix 80	AI8	B	192	195	Right-handed 310
Helix 81	AI9	B	196	204	Right-handed alpha
Helix 82	AJ1	B	206	216	Right-handed alpha
Helix 83	AJ2	B	221	228	Right-handed alpha
Helix 84	AJ3	B	228	239	Right-handed alpha
Helix 85	AJ4	B	269	274	Right-handed alpha
Helix 86	AJ5	B	275	277	Right-handed 310
Helix 87	AJ6	B	295	300	Right-handed alpha
Helix 88	AJ7	B	322	326	Right-handed 310
Helix 89	AJ8	B	345	351	Right-handed 310
Helix 90	AJ9	B	396	403	Right-handed alpha
Helix 91	AK1	B	443	448	Right-handed alpha
Helix 92	AK2	B	466	471	Right-handed alpha
Helix 93	AK3	B	490	494	Right-handed 310
Helix 94	AK4	B	543	548	Right-handed 310
Helix 95	AK5	B	564	570	Right-handed 310
Helix 96	AK6	B	588	594	Right-handed 310
Helix 97	AK7	B	611	618	Right-handed alpha
Helix 98	AK8	B	618	631	Right-handed alpha
Helix 99	AK9	B	650	661	Right-handed alpha
Helix 100	AL1	B	703	705	Right-handed 310
Helix 101	AL2	B	706	711	Right-handed alpha
Helix 102	AL3	B	712	714	Right-handed 310
Helix 103	AL4	B	729	745	Right-handed alpha
Helix 104	AL5	B	758	762	Right-handed 310
Helix 105	AL6	B	763	781	Right-handed alpha
Helix 106	AL7	B	797	799	Right-handed 310
Helix 107	AL8	B	811	825	Right-handed alpha
Helix 108	AL9	B	844	865	Right-handed alpha
Helix 109	AM1	B	872	882	Right-handed alpha
Helix 110	AM2	B	889	903	Right-handed alpha
Helix 111	AM3	B	912	916	Right-handed 310
Helix 112	AM4	B	923	937	Right-handed alpha
Helix 113	AM5	B	951	958	Right-handed alpha
Helix 114	AM6	B	967	978	Right-handed alpha
Helix 115	AM7	B	992	995	Right-handed 310
Helix 116	AM8	B	1026	1047	Right-handed alpha
Helix 117	AM9	B	1107	1111	Right-handed 310
Helix 118	AN1	B	1127	1145	Right-handed alpha
Helix 119	AN2	B	1146	1149	Right-handed 310
Helix 120	AN3	B	1165	1173	Right-handed alpha
Helix 121	AN4	B	1190	1200	Right-handed alpha
Helix 122	AN5	B	1219	1223	Right-handed 310
Helix 123	AN6	B	1228	1232	Right-handed 310
Helix 124	AN7	B	1234	1238	Right-handed 310
Helix 125	AN8	B	1243	1245	Right-handed 310
Helix 126	AN9	B	1286	1313	Right-handed alpha
Helix 127	AO1	B	1341	1351	Right-handed alpha
Helix 128	AO2	B	1359	1380	Right-handed alpha
Helix 129	AO3	B	1442	1460	Right-handed alpha
Helix 130	AO4	B	1468	1478	Right-handed alpha
Helix 131	AO5	B	1486	1491	Right-handed alpha
Helix 132	AO6	B	1492	1503	Right-handed alpha
Helix 133	AO7	B	1506	1510	Right-handed 310
Helix 134	AO8	B	1512	1521	Right-handed alpha
Helix 135	AO9	B	1522	1527	Right-handed alpha
Helix 136	AP1	B	1556	1559	Right-handed 310
Helix 137	AP2	B	1609	1611	Right-handed 310
Helix 138	AP3	B	1670	1678	Right-handed alpha
Helix 139	AP4	B	1685	1689	Right-handed 310
Helix 140	AP5	B	1904	1908	Right-handed 310
Helix 141	AP6	B	1950	1957	Right-handed 310
Helix 142	AP7	B	1990	2007	Right-handed alpha

There are 36 sheets in PDB entry 8E05. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	257	258	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	333	335	parallel
Strand 3	A	356	358	parallel
Strand 4	A	384	386	parallel
Strand 5	A	408	410	parallel
Strand 6	A	429	431	parallel
Strand 7	A	454	456	parallel
Strand 8	A	477	479	parallel
Strand 9	A	501	503	parallel
Strand 10	A	552	554	parallel
Strand 11	A	575	577	parallel
Strand 12	A	599	601	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	636	first strand
Strand 2	A	841	843	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	681	first strand
Strand 2	A	692	700	anti-parallel
Strand 3	A	638	644	parallel
Strand 4	A	719	725	parallel
Strand 5	A	751	757	parallel
Strand 6	A	801	803	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	870	871	first strand
Strand 2	A	919	920	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	948	950	first strand
Strand 2	A	988	990	anti-parallel
Strand 3	A	982	984	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1080	1086	first strand
Strand 2	A	1089	1094	anti-parallel
Strand 3	A	1097	1103	anti-parallel
Strand 4	A	1114	1122	anti-parallel
Strand 5	A	1013	1020	anti-parallel
Strand 6	A	1159	1164	anti-parallel
Strand 7	A	1187	1189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1203	first strand
Strand 2	A	1213	1214	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1247	1250	first strand
Strand 2	A	1256	1262	anti-parallel
Strand 3	A	1265	1271	anti-parallel
Strand 4	A	1331	1335	anti-parallel
Strand 5	A	1322	1326	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1392	1394	first strand
Strand 2	A	1405	1407	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1528	1536	first strand
Strand 2	A	1980	1987	anti-parallel
Strand 3	A	1969	1975	anti-parallel
Strand 4	A	1958	1966	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1539	1542	first strand
Strand 2	A	1550	1554	anti-parallel
Strand 3	A	1561	1566	anti-parallel
Strand 4	A	1571	1578	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1584	1590	first strand
Strand 2	A	1593	1598	anti-parallel
Strand 3	A	1602	1607	anti-parallel
Strand 4	A	1619	1622	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1635	first strand
Strand 2	A	1640	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1661	1662	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1635	first strand
Strand 2	A	1640	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1667	1669	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1696	1699	first strand
Strand 2	A	1704	1709	anti-parallel
Strand 3	A	1712	1717	anti-parallel
Strand 4	A	1723	1727	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1736	1743	first strand
Strand 2	A	1749	1755	anti-parallel
Strand 3	A	1760	1765	anti-parallel
Strand 4	A	1771	1776	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1786	1789	first strand
Strand 2	A	1939	1948	anti-parallel
Strand 3	A	1928	1936	anti-parallel
Strand 4	A	1918	1922	anti-parallel
Strand 5	A	1913	1915	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	257	258	anti-parallel

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There are 12 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	308	first strand
Strand 2	B	333	335	parallel
Strand 3	B	356	358	parallel
Strand 4	B	384	386	parallel
Strand 5	B	408	410	parallel
Strand 6	B	429	431	parallel
Strand 7	B	454	456	parallel
Strand 8	B	477	479	parallel
Strand 9	B	501	503	parallel
Strand 10	B	552	554	parallel
Strand 11	B	575	577	parallel
Strand 12	B	599	601	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	634	636	first strand
Strand 2	B	841	843	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	681	first strand
Strand 2	B	692	700	anti-parallel
Strand 3	B	638	644	parallel
Strand 4	B	719	725	parallel
Strand 5	B	751	757	parallel
Strand 6	B	801	803	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	871	first strand
Strand 2	B	919	920	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	948	950	first strand
Strand 2	B	988	990	anti-parallel
Strand 3	B	982	984	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1080	1086	first strand
Strand 2	B	1089	1094	anti-parallel
Strand 3	B	1097	1103	anti-parallel
Strand 4	B	1114	1122	anti-parallel
Strand 5	B	1013	1020	anti-parallel
Strand 6	B	1159	1164	anti-parallel
Strand 7	B	1187	1189	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1202	1203	first strand
Strand 2	B	1213	1214	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1247	1250	first strand
Strand 2	B	1256	1262	anti-parallel
Strand 3	B	1265	1271	anti-parallel
Strand 4	B	1331	1335	anti-parallel
Strand 5	B	1322	1326	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1392	1394	first strand
Strand 2	B	1405	1407	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1528	1536	first strand
Strand 2	B	1980	1987	anti-parallel
Strand 3	B	1969	1975	anti-parallel
Strand 4	B	1958	1966	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1539	1542	first strand
Strand 2	B	1550	1554	anti-parallel
Strand 3	B	1561	1566	anti-parallel
Strand 4	B	1571	1578	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1584	1590	first strand
Strand 2	B	1593	1598	anti-parallel
Strand 3	B	1602	1607	anti-parallel
Strand 4	B	1619	1622	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1627	1635	first strand
Strand 2	B	1640	1647	anti-parallel
Strand 3	B	1652	1658	anti-parallel
Strand 4	B	1661	1662	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1627	1635	first strand
Strand 2	B	1640	1647	anti-parallel
Strand 3	B	1652	1658	anti-parallel
Strand 4	B	1667	1669	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1696	1699	first strand
Strand 2	B	1704	1709	anti-parallel
Strand 3	B	1712	1717	anti-parallel
Strand 4	B	1723	1727	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1736	1743	first strand
Strand 2	B	1749	1755	anti-parallel
Strand 3	B	1760	1765	anti-parallel
Strand 4	B	1771	1776	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1786	1789	first strand
Strand 2	B	1939	1948	anti-parallel
Strand 3	B	1928	1936	anti-parallel
Strand 4	B	1918	1922	anti-parallel
Strand 5	B	1913	1915	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E05

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E05