Analysis of interatomic Contacts of Structural Units in PDB entry:
8E06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E06 entry

There is 1 chain in PDB entry 8E06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 51	LEU 2007

There are 69 helices in PDB entry 8E06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	64	Right-handed alpha
Helix 2	AA2	A	66	81	Right-handed alpha
Helix 3	AA3	A	83	98	Right-handed alpha
Helix 4	AA4	A	99	109	Right-handed alpha
Helix 5	AA5	A	122	131	Right-handed alpha
Helix 6	AA6	A	132	142	Right-handed alpha
Helix 7	AA7	A	149	164	Right-handed alpha
Helix 8	AA8	A	165	177	Right-handed alpha
Helix 9	AA9	A	196	204	Right-handed alpha
Helix 10	AB1	A	206	216	Right-handed alpha
Helix 11	AB2	A	221	228	Right-handed alpha
Helix 12	AB3	A	228	240	Right-handed alpha
Helix 13	AB4	A	269	277	Right-handed 310
Helix 14	AB5	A	322	326	Right-handed 310
Helix 15	AB6	A	345	351	Right-handed 310
Helix 16	AB7	A	396	403	Right-handed alpha
Helix 17	AB8	A	443	448	Right-handed alpha
Helix 18	AB9	A	466	471	Right-handed alpha
Helix 19	AC1	A	490	494	Right-handed 310
Helix 20	AC2	A	544	549	Right-handed 310
Helix 21	AC3	A	564	570	Right-handed 310
Helix 22	AC4	A	588	594	Right-handed 310
Helix 23	AC5	A	611	618	Right-handed alpha
Helix 24	AC6	A	618	631	Right-handed alpha
Helix 25	AC7	A	650	661	Right-handed alpha
Helix 26	AC8	A	703	705	Right-handed 310
Helix 27	AC9	A	706	711	Right-handed alpha
Helix 28	AD1	A	712	714	Right-handed 310
Helix 29	AD2	A	728	747	Right-handed alpha
Helix 30	AD3	A	758	762	Right-handed 310
Helix 31	AD4	A	763	781	Right-handed alpha
Helix 32	AD5	A	797	799	Right-handed 310
Helix 33	AD6	A	811	826	Right-handed alpha
Helix 34	AD7	A	844	864	Right-handed alpha
Helix 35	AD8	A	871	881	Right-handed alpha
Helix 36	AD9	A	889	904	Right-handed alpha
Helix 37	AE1	A	912	916	Right-handed 310
Helix 38	AE2	A	923	936	Right-handed alpha
Helix 39	AE3	A	951	958	Right-handed alpha
Helix 40	AE4	A	964	978	Right-handed alpha
Helix 41	AE5	A	992	995	Right-handed 310
Helix 42	AE6	A	1002	1007	Right-handed alpha
Helix 43	AE7	A	1026	1046	Right-handed alpha
Helix 44	AE8	A	1107	1111	Right-handed 310
Helix 45	AE9	A	1127	1145	Right-handed alpha
Helix 46	AF1	A	1146	1149	Right-handed 310
Helix 47	AF2	A	1165	1173	Right-handed alpha
Helix 48	AF3	A	1190	1200	Right-handed alpha
Helix 49	AF4	A	1216	1218	Right-handed 310
Helix 50	AF5	A	1219	1224	Right-handed 310
Helix 51	AF6	A	1228	1232	Right-handed 310
Helix 52	AF7	A	1234	1236	Right-handed 310
Helix 53	AF8	A	1243	1245	Right-handed 310
Helix 54	AF9	A	1286	1313	Right-handed alpha
Helix 55	AG1	A	1341	1351	Right-handed alpha
Helix 56	AG2	A	1359	1380	Right-handed alpha
Helix 57	AG3	A	1442	1460	Right-handed alpha
Helix 58	AG4	A	1468	1478	Right-handed alpha
Helix 59	AG5	A	1486	1491	Right-handed alpha
Helix 60	AG6	A	1492	1503	Right-handed alpha
Helix 61	AG7	A	1506	1510	Right-handed 310
Helix 62	AG8	A	1512	1522	Right-handed alpha
Helix 63	AG9	A	1523	1526	Right-handed 310
Helix 64	AH1	A	1556	1559	Right-handed 310
Helix 65	AH2	A	1609	1611	Right-handed 310
Helix 66	AH3	A	1670	1678	Right-handed alpha
Helix 67	AH4	A	1685	1689	Right-handed 310
Helix 68	AH5	A	1950	1957	Right-handed 310
Helix 69	AH6	A	1990	2006	Right-handed alpha

There are 19 sheets in PDB entry 8E06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	242	first strand
Strand 2	A	257	258	anti-parallel

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There are 12 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	333	335	parallel
Strand 3	A	356	358	parallel
Strand 4	A	384	386	parallel
Strand 5	A	408	410	parallel
Strand 6	A	429	431	parallel
Strand 7	A	454	456	parallel
Strand 8	A	477	479	parallel
Strand 9	A	501	503	parallel
Strand 10	A	552	554	parallel
Strand 11	A	575	577	parallel
Strand 12	A	599	601	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	636	first strand
Strand 2	A	841	843	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	681	first strand
Strand 2	A	692	700	anti-parallel
Strand 3	A	638	644	parallel
Strand 4	A	719	725	parallel
Strand 5	A	751	757	parallel
Strand 6	A	801	803	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	869	870	first strand
Strand 2	A	920	921	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	948	950	anti-parallel
Strand 3	A	988	990	anti-parallel
Strand 4	A	982	984	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1082	1086	first strand
Strand 2	A	1089	1094	anti-parallel
Strand 3	A	1097	1103	anti-parallel
Strand 4	A	1114	1122	anti-parallel
Strand 5	A	1013	1020	anti-parallel
Strand 6	A	1159	1164	anti-parallel
Strand 7	A	1187	1189	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1202	1205	first strand
Strand 2	A	1208	1214	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1238	1239	first strand
Strand 2	A	1256	1262	anti-parallel
Strand 3	A	1247	1250	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1238	1239	first strand
Strand 2	A	1256	1262	anti-parallel
Strand 3	A	1265	1271	anti-parallel
Strand 4	A	1331	1335	anti-parallel
Strand 5	A	1322	1326	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1392	1394	first strand
Strand 2	A	1405	1407	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1528	1536	first strand
Strand 2	A	1980	1987	anti-parallel
Strand 3	A	1969	1975	anti-parallel
Strand 4	A	1958	1964	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1539	1541	first strand
Strand 2	A	1550	1554	anti-parallel
Strand 3	A	1561	1566	anti-parallel
Strand 4	A	1571	1578	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1584	1590	first strand
Strand 2	A	1593	1598	anti-parallel
Strand 3	A	1602	1607	anti-parallel
Strand 4	A	1619	1622	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1635	first strand
Strand 2	A	1640	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1661	1662	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1627	1635	first strand
Strand 2	A	1640	1647	anti-parallel
Strand 3	A	1652	1658	anti-parallel
Strand 4	A	1667	1669	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1696	1699	first strand
Strand 2	A	1704	1709	anti-parallel
Strand 3	A	1712	1717	anti-parallel
Strand 4	A	1723	1727	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1736	1743	first strand
Strand 2	A	1749	1755	anti-parallel
Strand 3	A	1760	1765	anti-parallel
Strand 4	A	1771	1776	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1786	1789	first strand
Strand 2	A	1939	1948	anti-parallel
Strand 3	A	1928	1936	anti-parallel
Strand 4	A	1918	1921	anti-parallel
Strand 5	A	1913	1915	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E06

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E06