Analysis of interatomic Contacts of Structural Units in PDB entry:
8E0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E0E entry

There are 2 chains in PDB entry 8E0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29THR 425
B
 GLN 2SER 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8E0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 56Right-handed alpha
Helix 2
AA2
A
120 135Right-handed alpha
Helix 3
AA3
A
239 257Right-handed alpha
Helix 4
AA4
A
269 273Right-handed 310
Helix 5
AA5
A
274 279Right-handed alpha
Helix 6
AA6
A
282 289Right-handed alpha
Helix 7
AA7
A
295 310Right-handed alpha
Helix 8
AA8
A
325 329Right-handed 310
Helix 9
AA9
A
345 355Right-handed alpha
Helix 10
AB1
A
357 363Right-handed alpha
Helix 11
AB2
A
363 376Right-handed alpha
Helix 12
AB3
A
378 383Right-handed alpha
Helix 13
AB4
A
391 411Right-handed alpha
Helix 14
AB5
A
419 423Right-handed 310
Helix 15
AB6
B
29 33Right-handed 310
Helix 16
AB7
B
63 66Right-handed 310
Helix 17
AB8
B
88 92Right-handed 310
Helix 18
AB9
B
106 110Right-handed 310
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There are 6 sheets in PDB entry 8E0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
103 108anti-parallel
Strand 3
A
92 98anti-parallel
Strand 4
A
62 66anti-parallel
Strand 5
A
220 223anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
337 341parallel
Strand 3
A
385 387parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 266first strand
Strand 2
A
315 320parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
16 25anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
69 74anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
93 100anti-parallel
Strand 5
B
112 113anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
46 52anti-parallel
Strand 3
B
34 40anti-parallel
Strand 4
B
93 100anti-parallel
Strand 5
B
117 119anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il