Analysis of interatomic Contacts of Structural Units in PDB entry:
8E0H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E0H entry

There are 2 chains in PDB entry 8E0H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 13ASP 198
B
 SER 14ASP 198
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8E0H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 19Right-handed alpha
Helix 2
AA2
A
37 45Right-handed alpha
Helix 3
AA3
A
80 90Right-handed alpha
Helix 4
AA4
A
104 106Right-handed 310
Helix 5
AA5
A
107 120Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
143 151Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
185 195Right-handed alpha
Helix 10
AB1
B
15 19Right-handed alpha
Helix 11
AB2
B
37 46Right-handed alpha
Helix 12
AB3
B
80 90Right-handed alpha
Helix 13
AB4
B
104 106Right-handed 310
Helix 14
AB5
B
107 120Right-handed alpha
Helix 15
AB6
B
121 125Right-handed 310
Helix 16
AB7
B
143 151Right-handed alpha
Helix 17
AB8
B
179 183Right-handed 310
Helix 18
AB9
B
185 195Right-handed alpha
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There are 2 sheets in PDB entry 8E0H. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
69 73anti-parallel
Strand 3
A
26 32parallel
Strand 4
A
95 101parallel
Strand 5
A
129 134parallel
Strand 6
A
173 177parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 57first strand
Strand 2
B
61 66anti-parallel
Strand 3
B
69 73anti-parallel
Strand 4
B
26 32parallel
Strand 5
B
95 101parallel
Strand 6
B
129 134parallel
Strand 7
B
173 177parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il