Analysis of interatomic Contacts of Structural Units in PDB entry:
8E10


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E10 entry

There are 2 chains in PDB entry 8E10 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 90GLU 335
B
 GLN 90GLU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8E10. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
90 102Right-handed alpha
Helix 2
AA2
A
107 117Right-handed alpha
Helix 3
AA3
A
121 127Right-handed alpha
Helix 4
AA4
A
128 132Right-handed 310
Helix 5
AA5
A
133 142Right-handed alpha
Helix 6
AA6
A
144 148Right-handed 310
Helix 7
AA7
A
152 170Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
207 221Right-handed alpha
Helix 10
AB1
A
261 263Right-handed 310
Helix 11
AB2
A
264 274Right-handed alpha
Helix 12
AB3
A
275 289Right-handed alpha
Helix 13
AB4
A
315 323Right-handed alpha
Helix 14
AB5
A
329 333Right-handed 310
Helix 15
AB6
B
91 102Right-handed alpha
Helix 16
AB7
B
107 117Right-handed alpha
Helix 17
AB8
B
121 127Right-handed alpha
Helix 18
AB9
B
128 132Right-handed 310
Helix 19
AC1
B
133 142Right-handed alpha
Helix 20
AC2
B
142 147Right-handed alpha
Helix 21
AC3
B
152 170Right-handed alpha
Helix 22
AC4
B
178 183Right-handed alpha
Helix 23
AC5
B
207 221Right-handed alpha
Helix 24
AC6
B
261 263Right-handed 310
Helix 25
AC7
B
264 274Right-handed alpha
Helix 26
AC8
B
275 289Right-handed alpha
Helix 27
AC9
B
315 323Right-handed alpha
Helix 28
AD1
B
329 333Right-handed 310
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There are 6 sheets in PDB entry 8E10. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
187 188anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
191 196anti-parallel
Strand 3
A
253 259parallel
Strand 4
A
234 239anti-parallel
Strand 5
A
224 230anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
298 300anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 151first strand
Strand 2
B
187 188anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
191 196anti-parallel
Strand 3
B
253 259parallel
Strand 4
B
234 239anti-parallel
Strand 5
B
224 230anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
298 300anti-parallel
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