Analysis of interatomic Contacts of Structural Units in PDB entry:
8E28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E28 entry

There are 2 chains in PDB entry 8E28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 49LYS 858
C
 C 1 U 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8E28. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 66Right-handed alpha
Helix 2
AA2
A
292 297Right-handed 310
Helix 3
AA3
A
329 341Right-handed alpha
Helix 4
AA4
A
348 353Right-handed alpha
Helix 5
AA5
A
364 369Right-handed 310
Helix 6
AA6
A
421 430Right-handed alpha
Helix 7
AA7
A
445 451Right-handed alpha
Helix 8
AA8
A
495 503Right-handed alpha
Helix 9
AA9
A
509 513Right-handed 310
Helix 10
AB1
A
521 547Right-handed alpha
Helix 11
AB2
A
577 601Right-handed alpha
Helix 12
AB3
A
614 627Right-handed alpha
Helix 13
AB4
A
637 646Right-handed alpha
Helix 14
AB5
A
653 666Right-handed alpha
Helix 15
AB6
A
682 687Right-handed 310
Helix 16
AB7
A
706 719Right-handed alpha
Helix 17
AB8
A
728 764Right-handed alpha
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There are 10 sheets in PDB entry 8E28. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
110 115anti-parallel
Strand 3
A
233 240anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
94 97anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 252first strand
Strand 2
A
265 270anti-parallel
Strand 3
A
278 281anti-parallel
Strand 4
A
315 325parallel
Strand 5
A
299 307anti-parallel
Strand 6
A
246 252anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 374first strand
Strand 2
A
476 487parallel
Strand 3
A
460 470anti-parallel
Strand 4
A
404 411anti-parallel
Strand 5
A
392 398anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
490 492parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
440 441anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 560first strand
Strand 2
A
567 572anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 609first strand
Strand 2
A
673 676anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 796first strand
Strand 2
A
781 786anti-parallel
Strand 3
A
768 777anti-parallel
Strand 4
A
839 846anti-parallel
Strand 5
A
853 857anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 809first strand
Strand 2
A
814 820anti-parallel
Strand 3
A
831 834anti-parallel
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