Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E2A entry

There are 2 chains in PDB entry 8E2A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 49LYS 858
B
 C 1 U 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8E2A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 66Right-handed alpha
Helix 2
AA2
A
283 285Right-handed 310
Helix 3
AA3
A
292 297Right-handed 310
Helix 4
AA4
A
325 340Right-handed alpha
Helix 5
AA5
A
421 431Right-handed alpha
Helix 6
AA6
A
445 451Right-handed alpha
Helix 7
AA7
A
494 502Right-handed alpha
Helix 8
AA8
A
509 513Right-handed 310
Helix 9
AA9
A
522 546Right-handed alpha
Helix 10
AB1
A
576 601Right-handed alpha
Helix 11
AB2
A
614 629Right-handed alpha
Helix 12
AB3
A
636 646Right-handed alpha
Helix 13
AB4
A
651 666Right-handed alpha
Helix 14
AB5
A
682 687Right-handed 310
Helix 15
AB6
A
705 719Right-handed alpha
Helix 16
AB7
A
728 766Right-handed alpha
Helix 17
AB8
A
798 800Right-handed 310
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There are 9 sheets in PDB entry 8E2A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
110 114anti-parallel
Strand 3
A
234 240anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
94 97anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
556 560first strand
Strand 2
A
567 572anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
A
315 319anti-parallel
Strand 5
A
278 281parallel
Strand 6
A
265 270anti-parallel
Strand 7
A
246 252anti-parallel
Strand 8
A
300 307anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 373first strand
Strand 2
A
476 487parallel
Strand 3
A
460 470anti-parallel
Strand 4
A
404 411anti-parallel
Strand 5
A
392 398anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 383first strand
Strand 2
A
490 493parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
440 441anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
606 609first strand
Strand 2
A
673 676anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
791 796first strand
Strand 2
A
781 786anti-parallel
Strand 3
A
768 777anti-parallel
Strand 4
A
839 846anti-parallel
Strand 5
A
853 856anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 810first strand
Strand 2
A
813 820anti-parallel
Strand 3
A
831 834anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il