Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E2F entry

There is 1 chain in PDB entry 8E2F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1010ASN 2600
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8E2F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1018 1028Right-handed alpha
Helix 2
AA2
A
1050 1055Right-handed alpha
Helix 3
AA3
A
1060 1067Right-handed 310
Helix 4
AA4
A
1069 1072Right-handed 310
Helix 5
AA5
A
1171 1177Right-handed alpha
Helix 6
AA6
A
1189 1192Right-handed 310
Helix 7
AA7
A
1205 1210Right-handed alpha
Helix 8
AA8
A
1291 1294Right-handed 310
Helix 9
AA9
A
1313 1324Right-handed alpha
Helix 10
AB1
A
1324 1336Right-handed alpha
Helix 11
AB2
A
1339 1343Right-handed 310
Helix 12
AB3
A
1345 1364Right-handed alpha
Helix 13
AB4
A
1377 1384Right-handed alpha
Helix 14
AB5
A
1384 1395Right-handed alpha
Helix 15
AB6
A
1397 1414Right-handed alpha
Helix 16
AB7
A
1423 1436Right-handed alpha
Helix 17
AB8
A
1437 1442Right-handed 310
Helix 18
AB9
A
1444 1459Right-handed alpha
Helix 19
AC1
A
1462 1484Right-handed alpha
Helix 20
AC2
A
1486 1496Right-handed alpha
Helix 21
AC3
A
1823 1828Right-handed alpha
Helix 22
AC4
A
2012 2018Right-handed alpha
Helix 23
AC5
A
2019 2041Right-handed alpha
Helix 24
AC6
A
2055 2067Right-handed alpha
Helix 25
AC7
A
2071 2087Right-handed alpha
Helix 26
AC8
A
2091 2105Right-handed alpha
Helix 27
AC9
A
2113 2128Right-handed alpha
Helix 28
AD1
A
2132 2147Right-handed alpha
Helix 29
AD2
A
2148 2150Right-handed 310
Helix 30
AD3
A
2164 2182Right-handed alpha
Helix 31
AD4
A
2326 2341Right-handed alpha
Helix 32
AD5
A
2348 2365Right-handed alpha
Helix 33
AD6
A
2568 2574Right-handed 310
Helix 34
AD7
A
2576 2599Right-handed alpha
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There are 6 sheets in PDB entry 8E2F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1033first strand
Strand 2
A
1296 1306anti-parallel
Strand 3
A
1074 1079anti-parallel
Strand 4
A
1046 1048anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1031 1033first strand
Strand 2
A
1296 1306anti-parallel
Strand 3
A
1101 1110anti-parallel
Strand 4
A
1199 1203anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1039 1041first strand
Strand 2
A
1089 1094anti-parallel
Strand 3
A
1219 1226anti-parallel
Strand 4
A
1120 1126anti-parallel
Strand 5
A
1181 1187anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1564 1565first strand
Strand 2
A
1877 1881anti-parallel
Strand 3
A
1788 1806anti-parallel
Strand 4
A
1852 1862anti-parallel
Strand 5
A
1812 1820anti-parallel
Strand 6
A
1829 1834anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1569 1573first strand
Strand 2
A
1788 1806anti-parallel
Strand 3
A
1842 1844anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1578 1580first strand
Strand 2
A
1777 1780anti-parallel
Strand 3
A
1871 1874anti-parallel
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