Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E2L entry

There are 7 chains in PDB entry 8E2L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	PRO 48	ILE 512
M	T 6	T 17
A	PRO 48	ILE 512
B	PRO 48	ILE 512
D	PRO 48	ILE 512
E	ALA 242	ILE 512
F	HIS 244	ILE 512

There are 95 helices in PDB entry 8E2L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	48	52	Right-handed 310
Helix 2	AA2	C	68	73	Right-handed alpha
Helix 3	AA3	C	102	106	Right-handed 310
Helix 4	AA4	C	145	155	Right-handed alpha
Helix 5	AA5	C	174	180	Right-handed alpha
Helix 6	AA6	C	194	205	Right-handed alpha
Helix 7	AA7	C	219	226	Right-handed alpha
Helix 8	AA8	C	228	235	Right-handed alpha
Helix 9	AA9	C	253	263	Right-handed alpha
Helix 10	AB1	C	263	268	Right-handed alpha
Helix 11	AB2	C	276	280	Right-handed 310
Helix 12	AB3	C	300	314	Right-handed alpha
Helix 13	AB4	C	329	341	Right-handed alpha
Helix 14	AB5	C	350	358	Right-handed alpha
Helix 15	AB6	C	373	389	Right-handed alpha
Helix 16	AB7	C	397	403	Right-handed alpha
Helix 17	AB8	C	413	430	Right-handed alpha
Helix 18	AB9	C	457	462	Right-handed alpha
Helix 19	AC1	A	65	67	Right-handed 310
Helix 20	AC2	A	68	73	Right-handed alpha
Helix 21	AC3	A	102	106	Right-handed 310
Helix 22	AC4	A	145	155	Right-handed alpha
Helix 23	AC5	A	174	181	Right-handed alpha
Helix 24	AC6	A	194	205	Right-handed alpha
Helix 25	AC7	A	219	226	Right-handed alpha
Helix 26	AC8	A	228	237	Right-handed alpha
Helix 27	AC9	A	249	252	Right-handed 310
Helix 28	AD1	A	253	263	Right-handed alpha
Helix 29	AD2	A	264	267	Right-handed 310
Helix 30	AD3	A	276	280	Right-handed 310
Helix 31	AD4	A	300	314	Right-handed alpha
Helix 32	AD5	A	327	340	Right-handed alpha
Helix 33	AD6	A	350	360	Right-handed alpha
Helix 34	AD7	A	373	389	Right-handed alpha
Helix 35	AD8	A	397	403	Right-handed alpha
Helix 36	AD9	A	413	430	Right-handed alpha
Helix 37	AE1	A	457	462	Right-handed alpha
Helix 38	AE2	B	65	67	Right-handed 310
Helix 39	AE3	B	68	73	Right-handed alpha
Helix 40	AE4	B	102	106	Right-handed 310
Helix 41	AE5	B	145	155	Right-handed alpha
Helix 42	AE6	B	174	181	Right-handed alpha
Helix 43	AE7	B	194	205	Right-handed alpha
Helix 44	AE8	B	219	226	Right-handed alpha
Helix 45	AE9	B	228	237	Right-handed alpha
Helix 46	AF1	B	249	252	Right-handed 310
Helix 47	AF2	B	253	263	Right-handed alpha
Helix 48	AF3	B	263	268	Right-handed alpha
Helix 49	AF4	B	276	280	Right-handed 310
Helix 50	AF5	B	300	314	Right-handed alpha
Helix 51	AF6	B	329	341	Right-handed alpha
Helix 52	AF7	B	350	360	Right-handed alpha
Helix 53	AF8	B	373	389	Right-handed alpha
Helix 54	AF9	B	397	403	Right-handed alpha
Helix 55	AG1	B	413	430	Right-handed alpha
Helix 56	AG2	B	457	462	Right-handed alpha
Helix 57	AG3	D	66	73	Right-handed alpha
Helix 58	AG4	D	102	106	Right-handed 310
Helix 59	AG5	D	145	154	Right-handed alpha
Helix 60	AG6	D	174	181	Right-handed alpha
Helix 61	AG7	D	194	205	Right-handed alpha
Helix 62	AG8	D	219	226	Right-handed alpha
Helix 63	AG9	D	228	237	Right-handed alpha
Helix 64	AH1	D	250	252	Right-handed 310
Helix 65	AH2	D	253	263	Right-handed alpha
Helix 66	AH3	D	263	268	Right-handed alpha
Helix 67	AH4	D	276	280	Right-handed 310
Helix 68	AH5	D	300	314	Right-handed alpha
Helix 69	AH6	D	327	341	Right-handed alpha
Helix 70	AH7	D	350	360	Right-handed alpha
Helix 71	AH8	D	373	389	Right-handed alpha
Helix 72	AH9	D	397	403	Right-handed alpha
Helix 73	AI1	D	413	430	Right-handed alpha
Helix 74	AI2	D	457	463	Right-handed alpha
Helix 75	AI3	E	249	263	Right-handed alpha
Helix 76	AI4	E	263	268	Right-handed alpha
Helix 77	AI5	E	276	280	Right-handed 310
Helix 78	AI6	E	300	314	Right-handed alpha
Helix 79	AI7	E	327	341	Right-handed alpha
Helix 80	AI8	E	350	360	Right-handed alpha
Helix 81	AI9	E	373	389	Right-handed alpha
Helix 82	AJ1	E	397	403	Right-handed alpha
Helix 83	AJ2	E	413	430	Right-handed alpha
Helix 84	AJ3	E	449	453	Right-handed 310
Helix 85	AJ4	E	457	462	Right-handed alpha
Helix 86	AJ5	F	254	259	Right-handed alpha
Helix 87	AJ6	F	276	281	Right-handed 310
Helix 88	AJ7	F	300	314	Right-handed alpha
Helix 89	AJ8	F	327	341	Right-handed alpha
Helix 90	AJ9	F	343	349	Right-handed 310
Helix 91	AK1	F	350	360	Right-handed alpha
Helix 92	AK2	F	373	389	Right-handed alpha
Helix 93	AK3	F	397	403	Right-handed alpha
Helix 94	AK4	F	413	430	Right-handed alpha
Helix 95	AK5	F	457	462	Right-handed alpha

There are 19 sheets in PDB entry 8E2L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	160	161	first strand
Strand 2	C	141	142	parallel
Strand 3	C	184	186	parallel
Strand 4	C	210	211	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	290	293	first strand
Strand 2	C	432	436	parallel
Strand 3	C	392	395	parallel
Strand 4	C	319	321	parallel
Strand 5	C	363	365	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	465	470	first strand
Strand 2	C	481	488	anti-parallel
Strand 3	C	496	499	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	501	502	first strand
Strand 2	C	507	508	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	161	first strand
Strand 2	A	139	142	parallel
Strand 3	A	183	186	parallel
Strand 4	A	210	211	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	B	363	366	anti-parallel
Strand 3	B	319	322	parallel
Strand 4	B	392	394	parallel
Strand 5	B	432	436	parallel
Strand 6	B	290	293	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	293	first strand
Strand 2	A	432	436	parallel
Strand 3	A	392	395	parallel
Strand 4	A	319	322	parallel
Strand 5	A	363	365	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	470	first strand
Strand 2	A	481	488	anti-parallel
Strand 3	A	496	502	anti-parallel
Strand 4	A	507	509	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	139	142	parallel
Strand 3	B	183	186	parallel
Strand 4	B	210	211	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	470	first strand
Strand 2	B	481	488	anti-parallel
Strand 3	B	496	502	anti-parallel
Strand 4	B	507	509	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	142	first strand
Strand 2	D	184	186	parallel
Strand 3	D	210	211	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	248	first strand
Strand 2	E	363	366	anti-parallel
Strand 3	E	319	322	parallel
Strand 4	E	392	395	parallel
Strand 5	E	432	436	parallel
Strand 6	E	290	293	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	290	293	first strand
Strand 2	D	432	436	parallel
Strand 3	D	392	395	parallel
Strand 4	D	319	322	parallel
Strand 5	D	363	365	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	465	470	first strand
Strand 2	D	481	488	anti-parallel
Strand 3	D	496	499	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	501	502	first strand
Strand 2	D	507	508	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	465	470	first strand
Strand 2	E	482	488	anti-parallel
Strand 3	E	496	498	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	501	502	first strand
Strand 2	E	507	508	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	290	293	first strand
Strand 2	F	432	436	parallel
Strand 3	F	392	394	parallel
Strand 4	F	319	321	parallel
Strand 5	F	363	365	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	468	470	first strand
Strand 2	F	481	484	anti-parallel
Strand 3	F	496	502	anti-parallel
Strand 4	F	507	509	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E2L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2L