Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E2P entry

There are 12 chains in PDB entry 8E2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 6PHE 156
B
 GLU 3PHE 156
C
 VAL 4ARG 154
D
 PHE 6PHE 156
E
 G 1 T 8
E
 C 10 A 13
F
 C 4 T 8
F
 C 10 A 13
G
 C 4 T 8
G
 C 10 A 13
H
 T 3 T 8
H
 C 10 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8E2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 25Right-handed alpha
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
57 71Right-handed alpha
Helix 4
AA4
A
87 98Right-handed alpha
Helix 5
AA5
A
137 150Right-handed alpha
Helix 6
AA6
A
152 156Right-handed 310
Helix 7
AA7
B
7 25Right-handed alpha
Helix 8
AA8
B
47 52Right-handed alpha
Helix 9
AA9
B
57 71Right-handed alpha
Helix 10
AB1
B
87 98Right-handed alpha
Helix 11
AB2
B
137 150Right-handed alpha
Helix 12
AB3
C
7 25Right-handed alpha
Helix 13
AB4
C
47 52Right-handed alpha
Helix 14
AB5
C
57 70Right-handed alpha
Helix 15
AB6
C
87 98Right-handed alpha
Helix 16
AB7
C
137 150Right-handed alpha
Helix 17
AB8
D
7 25Right-handed alpha
Helix 18
AB9
D
47 52Right-handed alpha
Helix 19
AC1
D
57 71Right-handed alpha
Helix 20
AC2
D
87 98Right-handed alpha
Helix 21
AC3
D
137 150Right-handed alpha
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There are 4 sheets in PDB entry 8E2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 45first strand
Strand 2
A
31 35anti-parallel
Strand 3
A
79 84anti-parallel
Strand 4
A
101 106parallel
Strand 5
A
131 133parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 45first strand
Strand 2
B
31 35anti-parallel
Strand 3
B
79 82anti-parallel
Strand 4
B
101 103parallel
Strand 5
B
131 133parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 45first strand
Strand 2
C
31 35anti-parallel
Strand 3
C
79 84anti-parallel
Strand 4
C
101 106parallel
Strand 5
C
131 133parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
40 45first strand
Strand 2
D
31 35anti-parallel
Strand 3
D
79 84anti-parallel
Strand 4
D
101 106parallel
Strand 5
D
131 133parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il