Analysis of interatomic Contacts of Structural Units in PDB entry:
8E2Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E2Y entry

There are 3 chains in PDB entry 8E2Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 72THR 296
B
 LEU 7GLN 235
C
 GLY 1LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8E2Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 85Right-handed alpha
Helix 2
AA2
A
112 115Right-handed 310
Helix 3
AA3
A
116 124Right-handed alpha
Helix 4
AA4
A
168 172Right-handed 310
Helix 5
AA5
B
68 75Right-handed alpha
Helix 6
AA6
B
75 81Right-handed alpha
Helix 7
AA7
B
133 137Right-handed 310
Helix 8
AA8
B
156 163Right-handed 310
Helix 9
AA9
C
42 49Right-handed 310
Helix 10
AB1
C
61 70Right-handed 310
Helix 11
AB2
C
94 98Right-handed 310
Helix 12
AB3
C
99 105Right-handed alpha
Helix 13
AB4
C
106 108Right-handed 310
Helix 14
AB5
C
145 151Right-handed alpha
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There are 9 sheets in PDB entry 8E2Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 94first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
138 140anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
190 192anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 179first strand
Strand 2
A
153 155anti-parallel
Strand 3
A
233 234anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 179first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
222 224anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 168first strand
Strand 2
B
107 111anti-parallel
Strand 3
B
199 203anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
72 74first strand
Strand 2
C
198 200anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 172first strand
Strand 2
C
111 120anti-parallel
Strand 3
C
202 207anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 172first strand
Strand 2
C
111 120anti-parallel
Strand 3
C
212 213anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 135first strand
Strand 2
C
153 157anti-parallel
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