Analysis of interatomic Contacts of Structural Units in PDB entry:
8E3A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E3A entry

There are 4 chains in PDB entry 8E3A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 297
B
 SER 300GLN 544
C
 GLY 550GLN 791
D
 SER 800LYS 857
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 8E3A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 10Right-handed 310
Helix 2
AA2
A
116 124Right-handed alpha
Helix 3
AA3
A
168 172Right-handed 310
Helix 4
AA4
A
280 284Right-handed 310
Helix 5
AA5
B
379 389Right-handed alpha
Helix 6
AA6
B
437 441Right-handed 310
Helix 7
AA7
B
461 465Right-handed 310
Helix 8
AA8
C
591 596Right-handed alpha
Helix 9
AA9
C
611 616Right-handed 310
Helix 10
AB1
C
648 655Right-handed alpha
Helix 11
AB2
C
694 701Right-handed alpha
Helix 12
AB3
D
838 843Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 8E3A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 95first strand
Strand 2
A
247 256anti-parallel
Strand 3
A
132 140anti-parallel
Strand 4
A
190 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
152 155anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 361first strand
Strand 2
B
522 528anti-parallel
Strand 3
B
398 401anti-parallel
Strand 4
B
480 483anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 417first strand
Strand 2
B
503 507anti-parallel
Strand 3
B
368 369anti-parallel
Strand 4
B
448 449anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 395first strand
Strand 2
B
531 536anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
600 602first strand
Strand 2
C
765 768anti-parallel
Strand 3
C
665 668anti-parallel
Strand 4
C
716 717anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
631 635first strand
Strand 2
C
742 747anti-parallel
Strand 3
C
680 685anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il