Analysis of interatomic Contacts of Structural Units in PDB entry:
8E3B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E3B entry

There are 3 chains in PDB entry 8E3B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 72THR 296
B
 LEU 7GLN 235
C
 GLY 1LEU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8E3B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
75 78Right-handed 310
Helix 2
AA2
A
79 84Right-handed alpha
Helix 3
AA3
A
112 115Right-handed 310
Helix 4
AA4
A
116 124Right-handed alpha
Helix 5
AA5
B
69 74Right-handed 310
Helix 6
AA6
B
75 82Right-handed alpha
Helix 7
AA7
B
132 137Right-handed alpha
Helix 8
AA8
B
156 163Right-handed 310
Helix 9
AA9
C
43 48Right-handed alpha
Helix 10
AB1
C
61 64Right-handed 310
Helix 11
AB2
C
65 70Right-handed alpha
Helix 12
AB3
C
99 106Right-handed alpha
Helix 13
AB4
C
145 152Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8E3B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 254anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
189 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
258 260anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 56first strand
Strand 2
B
217 223anti-parallel
Strand 3
B
91 96anti-parallel
Strand 4
B
175 180anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
63 67anti-parallel
Strand 3
B
197 203anti-parallel
Strand 4
B
106 111anti-parallel
Strand 5
B
165 169anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 88first strand
Strand 2
B
227 229anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 52first strand
Strand 2
C
198 207anti-parallel
Strand 3
C
111 121anti-parallel
Strand 4
C
166 172anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 74first strand
Strand 2
C
198 207anti-parallel
Strand 3
C
111 121anti-parallel
Strand 4
C
212 213anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
81 83first strand
Strand 2
C
180 184anti-parallel
Strand 3
C
130 136anti-parallel
Strand 4
C
154 158anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il