Analysis of interatomic Contacts of Structural Units in PDB entry:
8E3D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E3D entry

There are 9 chains in PDB entry 8E3D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 381	ASN 491
X	A 1	C 22
Y	G 1	T 22
B	GLY 378	ASN 491
D	A 1	C 22
E	G 1	T 22
F	PHE 381	ASN 491
H	A 1	C 22
I	G 1	T 22

There are 13 helices in PDB entry 8E3D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	396	402	Right-handed alpha
Helix 2	AA2	A	403	405	Right-handed 310
Helix 3	AA3	A	421	434	Right-handed alpha
Helix 4	AA4	A	449	462	Right-handed alpha
Helix 5	AA5	A	477	488	Right-handed alpha
Helix 6	AA6	B	396	406	Right-handed alpha
Helix 7	AA7	B	421	434	Right-handed alpha
Helix 8	AA8	B	449	458	Right-handed alpha
Helix 9	AA9	B	477	488	Right-handed alpha
Helix 10	AB1	F	396	406	Right-handed alpha
Helix 11	AB2	F	421	433	Right-handed alpha
Helix 12	AB3	F	449	461	Right-handed alpha
Helix 13	AB4	F	477	488	Right-handed alpha

There are 12 sheets in PDB entry 8E3D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	383	first strand
Strand 2	A	390	391	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	411	first strand
Strand 2	A	418	419	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	438	439	first strand
Strand 2	A	446	447	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	467	first strand
Strand 2	A	474	475	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	383	first strand
Strand 2	B	390	392	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	418	419	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	439	first strand
Strand 2	B	446	447	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	467	first strand
Strand 2	B	474	475	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	382	383	first strand
Strand 2	F	390	391	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	418	419	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	438	439	first strand
Strand 2	F	446	447	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	466	467	first strand
Strand 2	F	474	475	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E3D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E3D