Analysis of interatomic Contacts of Structural Units in PDB entry:
8E3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E3S entry

There is 1 chain in PDB entry 8E3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8E3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 20Right-handed 310
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
37 45Right-handed alpha
Helix 4
AA4
A
66 77Right-handed alpha
Helix 5
AA5
A
103 107Right-handed 310
Helix 6
AA6
A
110 125Right-handed alpha
Helix 7
AA7
A
138 149Right-handed alpha
Helix 8
AA8
A
163 178Right-handed alpha
Helix 9
AA9
A
184 193Right-handed alpha
Helix 10
AB1
A
198 204Right-handed alpha
Helix 11
AB2
A
205 214Right-handed alpha
Helix 12
AB3
A
215 218Right-handed 310
Helix 13
AB4
A
262 265Right-handed 310
Helix 14
AB5
A
268 284Right-handed alpha
Helix 15
AB6
A
301 306Right-handed 310
Helix 16
AB7
A
325 330Right-handed alpha
Helix 17
AB8
A
353 357Right-handed 310
Helix 18
AB9
A
372 378Right-handed alpha
Helix 19
AC1
A
382 398Right-handed alpha
Helix 20
AC2
A
413 418Right-handed 310
Helix 21
AC3
A
433 443Right-handed alpha
Helix 22
AC4
A
444 449Right-handed 310
Helix 23
AC5
A
473 488Right-handed alpha
Helix 24
AC6
A
488 494Right-handed alpha
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There are 5 sheets in PDB entry 8E3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
84 87anti-parallel
Strand 4
A
79 81anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
57 64anti-parallel
Strand 3
A
5 8anti-parallel
Strand 4
A
495 499parallel
Strand 5
A
454 457parallel
Strand 6
A
462 465anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 294first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
310 313anti-parallel
Strand 4
A
318 321anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 158first strand
Strand 2
A
228 236anti-parallel
Strand 3
A
239 249anti-parallel
Strand 4
A
252 260anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
370 371anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il