Analysis of interatomic Contacts of Structural Units in PDB entry:
8E40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E40 entry

There are 5 chains in PDB entry 8E40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 9ASN 383
B
 ARG 4ASP 173
C
 VAL 5ARG 151
R
 U 11 A 32
r
 U -4 A 20
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8E40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 21Right-handed alpha
Helix 2
AA2
A
65 79Right-handed alpha
Helix 3
AA3
A
97 111Right-handed alpha
Helix 4
AA4
A
128 142Right-handed alpha
Helix 5
AA5
A
153 165Right-handed alpha
Helix 6
AA6
A
178 193Right-handed alpha
Helix 7
AA7
A
198 206Right-handed alpha
Helix 8
AA8
A
259 266Right-handed alpha
Helix 9
AA9
A
267 270Right-handed 310
Helix 10
AB1
A
290 301Right-handed alpha
Helix 11
AB2
A
319 331Right-handed alpha
Helix 12
AB3
A
338 349Right-handed alpha
Helix 13
AB4
A
362 379Right-handed alpha
Helix 14
AB5
B
14 31Right-handed alpha
Helix 15
AB6
B
99 109Right-handed alpha
Helix 16
AB7
B
166 171Right-handed alpha
Helix 17
AB8
C
6 13Right-handed alpha
Helix 18
AB9
C
15 22Right-handed alpha
Helix 19
AC1
C
36 50Right-handed alpha
Helix 20
AC2
C
70 75Right-handed alpha
Helix 21
AC3
C
130 135Right-handed alpha
Helix 22
AC4
C
139 149Right-handed alpha
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There are 5 sheets in PDB entry 8E40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
53 57anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 87first strand
Strand 2
A
114 115parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
118 120parallel
Strand 3
A
150 151parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 240first strand
Strand 2
A
222 225anti-parallel
Strand 3
A
276 282anti-parallel
Strand 4
A
304 310parallel
Strand 5
A
334 336parallel
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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
62 69anti-parallel
Strand 4
B
83 90anti-parallel
Strand 5
B
6 13anti-parallel
Strand 6
C
64 69anti-parallel
Strand 7
C
55 58anti-parallel
Strand 8
C
25 29anti-parallel
Strand 9
C
120 127anti-parallel
Strand 10
C
106 114anti-parallel
Strand 11
C
95 103anti-parallel
Strand 12
C
85 87anti-parallel
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