Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4G

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E4G entry

There are 10 chains in PDB entry 8E4G (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
r	ARG 5	SER 496
0	MET 1	ARG 196
5	ARG 2	ARG 196
O	LYS 6	ARG 165
P	ALA 2	ILE 794
Y	VAL 4	ARG 165
a	GLY 19	SER 145
x	MET 1	MET 55
g	VAL 4	ARG 165
u	LYS 4	SER 496

There are 71 helices in PDB entry 8E4G. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	r	12	38	Right-handed alpha
Helix 2	AA2	r	39	43	Right-handed 310
Helix 3	AA3	r	61	77	Right-handed alpha
Helix 4	AA4	r	99	124	Right-handed alpha
Helix 5	AA5	r	125	140	Right-handed alpha
Helix 6	AA6	r	162	164	Right-handed 310
Helix 7	AA7	r	191	202	Right-handed alpha
Helix 8	AA8	r	267	271	Right-handed 310
Helix 9	AA9	r	272	295	Right-handed alpha
Helix 10	AB1	r	307	313	Right-handed alpha
Helix 11	AB2	r	323	325	Right-handed 310
Helix 12	AB3	r	335	356	Right-handed alpha
Helix 13	AB4	r	396	411	Right-handed alpha
Helix 14	AB5	r	428	433	Right-handed 310
Helix 15	AB6	r	438	451	Right-handed alpha
Helix 16	AB7	r	462	475	Right-handed alpha
Helix 17	AB8	r	484	496	Right-handed alpha
Helix 18	AB9	0	11	22	Right-handed alpha
Helix 19	AC1	0	37	57	Right-handed alpha
Helix 20	AC2	0	58	63	Right-handed 310
Helix 21	AC3	0	131	151	Right-handed alpha
Helix 22	AC4	0	153	180	Right-handed alpha
Helix 23	AC5	0	189	194	Right-handed alpha
Helix 24	AC6	5	13	23	Right-handed alpha
Helix 25	AC7	5	39	58	Right-handed alpha
Helix 26	AC8	5	131	151	Right-handed alpha
Helix 27	AC9	5	153	180	Right-handed alpha
Helix 28	AD1	5	187	194	Right-handed alpha
Helix 29	AD2	O	28	32	Right-handed 310
Helix 30	AD3	O	65	69	Right-handed 310
Helix 31	AD4	O	95	117	Right-handed alpha
Helix 32	AD5	O	150	153	Right-handed 310
Helix 33	AD6	O	154	165	Right-handed alpha
Helix 34	AD7	P	111	115	Right-handed alpha
Helix 35	AD8	P	186	192	Right-handed alpha
Helix 36	AD9	P	192	208	Right-handed alpha
Helix 37	AE1	P	253	257	Right-handed 310
Helix 38	AE2	P	341	345	Right-handed 310
Helix 39	AE3	P	478	482	Right-handed 310
Helix 40	AE4	P	618	622	Right-handed alpha
Helix 41	AE5	Y	28	32	Right-handed 310
Helix 42	AE6	Y	65	69	Right-handed 310
Helix 43	AE7	Y	95	119	Right-handed alpha
Helix 44	AE8	Y	153	163	Right-handed alpha
Helix 45	AE9	a	20	88	Right-handed alpha
Helix 46	AF1	a	93	145	Right-handed alpha
Helix 47	AF2	x	5	10	Right-handed alpha
Helix 48	AF3	x	36	53	Right-handed alpha
Helix 49	AF4	g	28	30	Right-handed 310
Helix 50	AF5	g	65	68	Right-handed 310
Helix 51	AF6	g	95	117	Right-handed alpha
Helix 52	AF7	g	151	165	Right-handed alpha
Helix 53	AF8	u	12	38	Right-handed alpha
Helix 54	AF9	u	39	43	Right-handed 310
Helix 55	AG1	u	61	78	Right-handed alpha
Helix 56	AG2	u	93	97	Right-handed 310
Helix 57	AG3	u	99	124	Right-handed alpha
Helix 58	AG4	u	125	140	Right-handed alpha
Helix 59	AG5	u	162	164	Right-handed 310
Helix 60	AG6	u	191	202	Right-handed alpha
Helix 61	AG7	u	267	271	Right-handed 310
Helix 62	AG8	u	272	295	Right-handed alpha
Helix 63	AG9	u	307	313	Right-handed alpha
Helix 64	AH1	u	323	325	Right-handed 310
Helix 65	AH2	u	335	356	Right-handed alpha
Helix 66	AH3	u	391	396	Right-handed alpha
Helix 67	AH4	u	396	411	Right-handed alpha
Helix 68	AH5	u	428	432	Right-handed 310
Helix 69	AH6	u	437	451	Right-handed alpha
Helix 70	AH7	u	462	475	Right-handed alpha
Helix 71	AH8	u	484	496	Right-handed alpha

There are 33 sheets in PDB entry 8E4G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	159	161	first strand
Strand 2	r	143	146	anti-parallel
Strand 3	r	253	254	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	166	167	first strand
Strand 2	r	178	186	anti-parallel
Strand 3	r	210	219	anti-parallel
Strand 4	r	226	231	anti-parallel
Strand 5	r	243	244	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	298	300	first strand
Strand 2	r	327	329	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	r	317	321	first strand
Strand 2	u	297	300	parallel
Strand 3	u	327	329	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	84	88	first strand
Strand 2	0	120	123	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	0	96	99	first strand
Strand 2	0	102	105	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	63	69	first strand
Strand 2	5	117	123	anti-parallel
Strand 3	5	84	89	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	96	99	first strand
Strand 2	5	102	105	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	10	12	first strand
Strand 2	O	72	74	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	122	124	first strand
Strand 2	O	128	130	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	4	8	first strand
Strand 2	P	781	786	anti-parallel
Strand 3	P	703	713	anti-parallel
Strand 4	P	749	755	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	30	32	first strand
Strand 2	P	675	679	anti-parallel
Strand 3	P	765	770	anti-parallel
Strand 4	P	717	721	anti-parallel
Strand 5	P	726	730	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	34	37	first strand
Strand 2	P	41	44	anti-parallel
Strand 3	P	777	778	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	49	53	first strand
Strand 2	P	571	577	anti-parallel
Strand 3	P	560	566	anti-parallel
Strand 4	P	551	553	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	65	71	first strand
Strand 2	P	75	81	anti-parallel
Strand 3	P	88	90	anti-parallel
Strand 4	P	95	96	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	98	99	first strand
Strand 2	P	320	323	parallel
Strand 3	P	310	314	anti-parallel
Strand 4	P	124	129	anti-parallel
Strand 5	P	116	121	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	212	215	first strand
Strand 2	P	219	223	anti-parallel
Strand 3	P	151	156	anti-parallel
Strand 4	P	244	247	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	172	178	first strand
Strand 2	P	164	169	anti-parallel
Strand 3	P	233	236	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	266	268	first strand
Strand 2	P	281	285	anti-parallel
Strand 3	P	290	293	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	351	354	first strand
Strand 2	P	357	362	anti-parallel
Strand 3	P	365	368	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	405	408	first strand
Strand 2	P	413	416	anti-parallel
Strand 3	P	421	426	anti-parallel
Strand 4	P	435	441	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	452	454	first strand
Strand 2	P	457	462	anti-parallel
Strand 3	P	469	473	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	500	502	first strand
Strand 2	P	514	516	anti-parallel
Strand 3	P	522	530	anti-parallel
Strand 4	P	535	544	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	505	506	first strand
Strand 2	P	511	512	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	595	601	first strand
Strand 2	P	666	671	anti-parallel
Strand 3	P	631	634	anti-parallel
Strand 4	P	640	642	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	607	608	first strand
Strand 2	P	613	617	anti-parallel
Strand 3	P	655	659	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	685	687	first strand
Strand 2	P	693	695	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	34	37	first strand
Strand 2	Y	41	44	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	50	52	first strand
Strand 2	Y	58	60	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	8	12	first strand
Strand 2	g	70	77	anti-parallel
Strand 3	g	32	38	anti-parallel
Strand 4	g	42	43	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	20	21	first strand
Strand 2	g	57	58	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	159	161	first strand
Strand 2	u	143	146	anti-parallel
Strand 3	u	253	254	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	u	166	167	first strand
Strand 2	u	178	185	anti-parallel
Strand 3	u	211	219	anti-parallel
Strand 4	u	226	231	anti-parallel
Strand 5	u	243	244	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E4G

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4G