Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E4M entry

There are 4 chains in PDB entry 8E4M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40LYS 1104
B
 ASP 40LYS 1104
C
 ASP 40LYS 1104
D
 ASP 40LYS 1104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are184 helices in PDB entry 8E4M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 49Right-handed alpha
Helix 2
AA2
A
125 136Right-handed alpha
Helix 3
AA3
A
158 176Right-handed alpha
Helix 4
AA4
A
187 202Right-handed alpha
Helix 5
AA5
A
274 288Right-handed alpha
Helix 6
AA6
A
309 322Right-handed alpha
Helix 7
AA7
A
335 343Right-handed alpha
Helix 8
AA8
A
351 362Right-handed alpha
Helix 9
AA9
A
362 369Right-handed alpha
Helix 10
AB1
A
370 387Right-handed alpha
Helix 11
AB2
A
403 418Right-handed alpha
Helix 12
AB3
A
425 437Right-handed alpha
Helix 13
AB4
A
438 446Right-handed alpha
Helix 14
AB5
A
454 468Right-handed alpha
Helix 15
AB6
A
470 480Right-handed alpha
Helix 16
AB7
A
483 488Right-handed alpha
Helix 17
AB8
A
489 500Right-handed alpha
Helix 18
AB9
A
502 516Right-handed alpha
Helix 19
AC1
A
520 534Right-handed alpha
Helix 20
AC2
A
559 571Right-handed alpha
Helix 21
AC3
A
573 583Right-handed alpha
Helix 22
AC4
A
586 603Right-handed alpha
Helix 23
AC5
A
607 636Right-handed alpha
Helix 24
AC6
A
637 646Right-handed alpha
Helix 25
AC7
A
655 663Right-handed alpha
Helix 26
AC8
A
665 670Right-handed alpha
Helix 27
AC9
A
671 684Right-handed alpha
Helix 28
AD1
A
691 701Right-handed alpha
Helix 29
AD2
A
702 707Right-handed 310
Helix 30
AD3
A
723 732Right-handed alpha
Helix 31
AD4
A
733 758Right-handed alpha
Helix 32
AD5
A
765 788Right-handed alpha
Helix 33
AD6
A
789 796Right-handed alpha
Helix 34
AD7
A
796 818Right-handed alpha
Helix 35
AD8
A
821 843Right-handed alpha
Helix 36
AD9
A
844 850Right-handed 310
Helix 37
AE1
A
853 890Right-handed alpha
Helix 38
AE2
A
897 913Right-handed alpha
Helix 39
AE3
A
916 922Right-handed alpha
Helix 40
AE4
A
953 988Right-handed alpha
Helix 41
AE5
A
992 1008Right-handed alpha
Helix 42
AE6
A
1012 1014Right-handed 310
Helix 43
AE7
A
1015 1025Right-handed alpha
Helix 44
AE8
A
1048 1070Right-handed alpha
Helix 45
AE9
A
1071 1074Right-handed 310
Helix 46
AF1
A
1075 1104Right-handed alpha
Helix 47
AF2
B
41 49Right-handed alpha
Helix 48
AF3
B
125 136Right-handed alpha
Helix 49
AF4
B
158 176Right-handed alpha
Helix 50
AF5
B
187 202Right-handed alpha
Helix 51
AF6
B
274 288Right-handed alpha
Helix 52
AF7
B
309 322Right-handed alpha
Helix 53
AF8
B
335 343Right-handed alpha
Helix 54
AF9
B
351 362Right-handed alpha
Helix 55
AG1
B
362 369Right-handed alpha
Helix 56
AG2
B
370 387Right-handed alpha
Helix 57
AG3
B
403 418Right-handed alpha
Helix 58
AG4
B
425 437Right-handed alpha
Helix 59
AG5
B
438 446Right-handed alpha
Helix 60
AG6
B
454 468Right-handed alpha
Helix 61
AG7
B
470 480Right-handed alpha
Helix 62
AG8
B
483 488Right-handed alpha
Helix 63
AG9
B
489 500Right-handed alpha
Helix 64
AH1
B
502 516Right-handed alpha
Helix 65
AH2
B
520 534Right-handed alpha
Helix 66
AH3
B
559 571Right-handed alpha
Helix 67
AH4
B
573 583Right-handed alpha
Helix 68
AH5
B
586 603Right-handed alpha
Helix 69
AH6
B
607 636Right-handed alpha
Helix 70
AH7
B
637 646Right-handed alpha
Helix 71
AH8
B
655 663Right-handed alpha
Helix 72
AH9
B
665 670Right-handed alpha
Helix 73
AI1
B
671 684Right-handed alpha
Helix 74
AI2
B
691 701Right-handed alpha
Helix 75
AI3
B
702 707Right-handed 310
Helix 76
AI4
B
723 732Right-handed alpha
Helix 77
AI5
B
733 758Right-handed alpha
Helix 78
AI6
B
765 788Right-handed alpha
Helix 79
AI7
B
789 796Right-handed alpha
Helix 80
AI8
B
796 818Right-handed alpha
Helix 81
AI9
B
821 843Right-handed alpha
Helix 82
AJ1
B
844 850Right-handed 310
Helix 83
AJ2
B
853 890Right-handed alpha
Helix 84
AJ3
B
897 913Right-handed alpha
Helix 85
AJ4
B
916 922Right-handed alpha
Helix 86
AJ5
B
953 988Right-handed alpha
Helix 87
AJ6
B
992 1008Right-handed alpha
Helix 88
AJ7
B
1012 1014Right-handed 310
Helix 89
AJ8
B
1015 1025Right-handed alpha
Helix 90
AJ9
B
1048 1070Right-handed alpha
Helix 91
AK1
B
1071 1074Right-handed 310
Helix 92
AK2
B
1075 1104Right-handed alpha
Helix 93
AK3
C
41 49Right-handed alpha
Helix 94
AK4
C
125 136Right-handed alpha
Helix 95
AK5
C
158 176Right-handed alpha
Helix 96
AK6
C
187 202Right-handed alpha
Helix 97
AK7
C
274 288Right-handed alpha
Helix 98
AK8
C
309 322Right-handed alpha
Helix 99
AK9
C
335 343Right-handed alpha
Helix 100
AL1
C
351 362Right-handed alpha
Helix 101
AL2
C
362 369Right-handed alpha
Helix 102
AL3
C
370 387Right-handed alpha
Helix 103
AL4
C
403 418Right-handed alpha
Helix 104
AL5
C
425 437Right-handed alpha
Helix 105
AL6
C
438 446Right-handed alpha
Helix 106
AL7
C
454 468Right-handed alpha
Helix 107
AL8
C
470 480Right-handed alpha
Helix 108
AL9
C
483 488Right-handed alpha
Helix 109
AM1
C
489 500Right-handed alpha
Helix 110
AM2
C
502 516Right-handed alpha
Helix 111
AM3
C
520 534Right-handed alpha
Helix 112
AM4
C
559 571Right-handed alpha
Helix 113
AM5
C
573 583Right-handed alpha
Helix 114
AM6
C
586 603Right-handed alpha
Helix 115
AM7
C
607 636Right-handed alpha
Helix 116
AM8
C
637 646Right-handed alpha
Helix 117
AM9
C
655 663Right-handed alpha
Helix 118
AN1
C
665 670Right-handed alpha
Helix 119
AN2
C
671 684Right-handed alpha
Helix 120
AN3
C
691 701Right-handed alpha
Helix 121
AN4
C
702 707Right-handed 310
Helix 122
AN5
C
723 732Right-handed alpha
Helix 123
AN6
C
733 758Right-handed alpha
Helix 124
AN7
C
765 788Right-handed alpha
Helix 125
AN8
C
789 796Right-handed alpha
Helix 126
AN9
C
796 818Right-handed alpha
Helix 127
AO1
C
821 843Right-handed alpha
Helix 128
AO2
C
844 850Right-handed 310
Helix 129
AO3
C
853 890Right-handed alpha
Helix 130
AO4
C
897 913Right-handed alpha
Helix 131
AO5
C
916 922Right-handed alpha
Helix 132
AO6
C
953 988Right-handed alpha
Helix 133
AO7
C
992 1008Right-handed alpha
Helix 134
AO8
C
1012 1014Right-handed 310
Helix 135
AO9
C
1015 1025Right-handed alpha
Helix 136
AP1
C
1048 1070Right-handed alpha
Helix 137
AP2
C
1071 1074Right-handed 310
Helix 138
AP3
C
1075 1104Right-handed alpha
Helix 139
AP4
D
41 49Right-handed alpha
Helix 140
AP5
D
125 136Right-handed alpha
Helix 141
AP6
D
158 176Right-handed alpha
Helix 142
AP7
D
187 202Right-handed alpha
Helix 143
AP8
D
274 288Right-handed alpha
Helix 144
AP9
D
309 322Right-handed alpha
Helix 145
AQ1
D
335 343Right-handed alpha
Helix 146
AQ2
D
351 362Right-handed alpha
Helix 147
AQ3
D
362 369Right-handed alpha
Helix 148
AQ4
D
370 387Right-handed alpha
Helix 149
AQ5
D
403 418Right-handed alpha
Helix 150
AQ6
D
425 437Right-handed alpha
Helix 151
AQ7
D
438 446Right-handed alpha
Helix 152
AQ8
D
454 468Right-handed alpha
Helix 153
AQ9
D
470 480Right-handed alpha
Helix 154
AR1
D
483 488Right-handed alpha
Helix 155
AR2
D
489 500Right-handed alpha
Helix 156
AR3
D
502 516Right-handed alpha
Helix 157
AR4
D
520 534Right-handed alpha
Helix 158
AR5
D
559 571Right-handed alpha
Helix 159
AR6
D
573 583Right-handed alpha
Helix 160
AR7
D
586 603Right-handed alpha
Helix 161
AR8
D
607 636Right-handed alpha
Helix 162
AR9
D
637 646Right-handed alpha
Helix 163
AS1
D
655 663Right-handed alpha
Helix 164
AS2
D
665 670Right-handed alpha
Helix 165
AS3
D
671 684Right-handed alpha
Helix 166
AS4
D
691 701Right-handed alpha
Helix 167
AS5
D
702 707Right-handed 310
Helix 168
AS6
D
723 732Right-handed alpha
Helix 169
AS7
D
733 758Right-handed alpha
Helix 170
AS8
D
765 788Right-handed alpha
Helix 171
AS9
D
789 796Right-handed alpha
Helix 172
AT1
D
796 818Right-handed alpha
Helix 173
AT2
D
821 843Right-handed alpha
Helix 174
AT3
D
844 850Right-handed 310
Helix 175
AT4
D
853 890Right-handed alpha
Helix 176
AT5
D
897 913Right-handed alpha
Helix 177
AT6
D
916 922Right-handed alpha
Helix 178
AT7
D
953 988Right-handed alpha
Helix 179
AT8
D
992 1008Right-handed alpha
Helix 180
AT9
D
1012 1014Right-handed 310
Helix 181
AU1
D
1015 1025Right-handed alpha
Helix 182
AU2
D
1048 1070Right-handed alpha
Helix 183
AU3
D
1071 1074Right-handed 310
Helix 184
AU4
D
1075 1104Right-handed alpha
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There are 4 sheets in PDB entry 8E4M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 121first strand
Strand 2
A
259 264parallel
Strand 3
A
210 216parallel
Strand 4
A
178 181parallel
Strand 5
A
144 146parallel
Strand 6
A
301 305parallel
Strand 7
A
326 329parallel
Strand 8
A
392 393parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 121first strand
Strand 2
B
259 264parallel
Strand 3
B
210 216parallel
Strand 4
B
178 181parallel
Strand 5
B
144 146parallel
Strand 6
B
301 305parallel
Strand 7
B
326 329parallel
Strand 8
B
392 393parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 121first strand
Strand 2
C
259 264parallel
Strand 3
C
210 216parallel
Strand 4
C
178 181parallel
Strand 5
C
144 146parallel
Strand 6
C
301 305parallel
Strand 7
C
326 329parallel
Strand 8
C
392 393parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 121first strand
Strand 2
D
259 264parallel
Strand 3
D
210 216parallel
Strand 4
D
178 181parallel
Strand 5
D
144 146parallel
Strand 6
D
301 305parallel
Strand 7
D
326 329parallel
Strand 8
D
392 393parallel
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