Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E4P entry

There are 4 chains in PDB entry 8E4P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 40LYS 1104
B
 ASP 40LYS 1104
C
 ASP 40LYS 1104
D
 ASP 40LYS 1104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are172 helices in PDB entry 8E4P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 50Right-handed alpha
Helix 2
AA2
A
125 137Right-handed alpha
Helix 3
AA3
A
158 176Right-handed alpha
Helix 4
AA4
A
187 202Right-handed alpha
Helix 5
AA5
A
273 287Right-handed alpha
Helix 6
AA6
A
309 322Right-handed alpha
Helix 7
AA7
A
334 343Right-handed alpha
Helix 8
AA8
A
351 362Right-handed alpha
Helix 9
AA9
A
362 369Right-handed alpha
Helix 10
AB1
A
370 386Right-handed alpha
Helix 11
AB2
A
403 419Right-handed alpha
Helix 12
AB3
A
425 437Right-handed alpha
Helix 13
AB4
A
438 445Right-handed alpha
Helix 14
AB5
A
458 468Right-handed alpha
Helix 15
AB6
A
470 480Right-handed alpha
Helix 16
AB7
A
483 488Right-handed alpha
Helix 17
AB8
A
489 499Right-handed alpha
Helix 18
AB9
A
502 517Right-handed alpha
Helix 19
AC1
A
518 533Right-handed alpha
Helix 20
AC2
A
559 571Right-handed alpha
Helix 21
AC3
A
573 584Right-handed alpha
Helix 22
AC4
A
587 604Right-handed alpha
Helix 23
AC5
A
607 636Right-handed alpha
Helix 24
AC6
A
637 645Right-handed alpha
Helix 25
AC7
A
655 664Right-handed alpha
Helix 26
AC8
A
665 670Right-handed alpha
Helix 27
AC9
A
671 684Right-handed alpha
Helix 28
AD1
A
691 701Right-handed alpha
Helix 29
AD2
A
702 708Right-handed 310
Helix 30
AD3
A
723 733Right-handed alpha
Helix 31
AD4
A
733 758Right-handed alpha
Helix 32
AD5
A
765 790Right-handed alpha
Helix 33
AD6
A
791 795Right-handed 310
Helix 34
AD7
A
796 817Right-handed alpha
Helix 35
AD8
A
821 852Right-handed alpha
Helix 36
AD9
A
856 890Right-handed alpha
Helix 37
AE1
A
895 913Right-handed alpha
Helix 38
AE2
A
955 979Right-handed alpha
Helix 39
AE3
A
979 985Right-handed alpha
Helix 40
AE4
A
989 1008Right-handed alpha
Helix 41
AE5
A
1012 1029Right-handed alpha
Helix 42
AE6
A
1048 1075Right-handed alpha
Helix 43
AE7
A
1078 1104Right-handed alpha
Helix 44
AE8
B
41 50Right-handed alpha
Helix 45
AE9
B
125 137Right-handed alpha
Helix 46
AF1
B
158 176Right-handed alpha
Helix 47
AF2
B
187 202Right-handed alpha
Helix 48
AF3
B
273 287Right-handed alpha
Helix 49
AF4
B
309 322Right-handed alpha
Helix 50
AF5
B
334 343Right-handed alpha
Helix 51
AF6
B
351 362Right-handed alpha
Helix 52
AF7
B
362 369Right-handed alpha
Helix 53
AF8
B
370 386Right-handed alpha
Helix 54
AF9
B
403 419Right-handed alpha
Helix 55
AG1
B
425 437Right-handed alpha
Helix 56
AG2
B
438 445Right-handed alpha
Helix 57
AG3
B
458 468Right-handed alpha
Helix 58
AG4
B
470 480Right-handed alpha
Helix 59
AG5
B
483 488Right-handed alpha
Helix 60
AG6
B
489 499Right-handed alpha
Helix 61
AG7
B
502 517Right-handed alpha
Helix 62
AG8
B
518 533Right-handed alpha
Helix 63
AG9
B
559 571Right-handed alpha
Helix 64
AH1
B
573 584Right-handed alpha
Helix 65
AH2
B
587 604Right-handed alpha
Helix 66
AH3
B
607 636Right-handed alpha
Helix 67
AH4
B
637 645Right-handed alpha
Helix 68
AH5
B
655 664Right-handed alpha
Helix 69
AH6
B
665 670Right-handed alpha
Helix 70
AH7
B
671 684Right-handed alpha
Helix 71
AH8
B
691 701Right-handed alpha
Helix 72
AH9
B
702 708Right-handed 310
Helix 73
AI1
B
723 733Right-handed alpha
Helix 74
AI2
B
733 758Right-handed alpha
Helix 75
AI3
B
765 790Right-handed alpha
Helix 76
AI4
B
791 795Right-handed 310
Helix 77
AI5
B
796 817Right-handed alpha
Helix 78
AI6
B
821 852Right-handed alpha
Helix 79
AI7
B
856 890Right-handed alpha
Helix 80
AI8
B
895 913Right-handed alpha
Helix 81
AI9
B
955 979Right-handed alpha
Helix 82
AJ1
B
979 985Right-handed alpha
Helix 83
AJ2
B
989 1008Right-handed alpha
Helix 84
AJ3
B
1012 1029Right-handed alpha
Helix 85
AJ4
B
1048 1075Right-handed alpha
Helix 86
AJ5
B
1078 1104Right-handed alpha
Helix 87
AJ6
C
41 50Right-handed alpha
Helix 88
AJ7
C
125 137Right-handed alpha
Helix 89
AJ8
C
158 176Right-handed alpha
Helix 90
AJ9
C
187 202Right-handed alpha
Helix 91
AK1
C
273 287Right-handed alpha
Helix 92
AK2
C
309 322Right-handed alpha
Helix 93
AK3
C
334 343Right-handed alpha
Helix 94
AK4
C
351 362Right-handed alpha
Helix 95
AK5
C
362 369Right-handed alpha
Helix 96
AK6
C
370 386Right-handed alpha
Helix 97
AK7
C
403 419Right-handed alpha
Helix 98
AK8
C
425 437Right-handed alpha
Helix 99
AK9
C
438 445Right-handed alpha
Helix 100
AL1
C
458 468Right-handed alpha
Helix 101
AL2
C
470 480Right-handed alpha
Helix 102
AL3
C
483 488Right-handed alpha
Helix 103
AL4
C
489 499Right-handed alpha
Helix 104
AL5
C
502 517Right-handed alpha
Helix 105
AL6
C
518 533Right-handed alpha
Helix 106
AL7
C
559 571Right-handed alpha
Helix 107
AL8
C
573 584Right-handed alpha
Helix 108
AL9
C
587 604Right-handed alpha
Helix 109
AM1
C
607 636Right-handed alpha
Helix 110
AM2
C
637 645Right-handed alpha
Helix 111
AM3
C
655 664Right-handed alpha
Helix 112
AM4
C
665 670Right-handed alpha
Helix 113
AM5
C
671 684Right-handed alpha
Helix 114
AM6
C
691 701Right-handed alpha
Helix 115
AM7
C
702 708Right-handed 310
Helix 116
AM8
C
723 733Right-handed alpha
Helix 117
AM9
C
733 758Right-handed alpha
Helix 118
AN1
C
765 790Right-handed alpha
Helix 119
AN2
C
791 795Right-handed 310
Helix 120
AN3
C
796 817Right-handed alpha
Helix 121
AN4
C
821 852Right-handed alpha
Helix 122
AN5
C
856 890Right-handed alpha
Helix 123
AN6
C
895 913Right-handed alpha
Helix 124
AN7
C
955 979Right-handed alpha
Helix 125
AN8
C
979 985Right-handed alpha
Helix 126
AN9
C
989 1008Right-handed alpha
Helix 127
AO1
C
1012 1029Right-handed alpha
Helix 128
AO2
C
1048 1075Right-handed alpha
Helix 129
AO3
C
1078 1104Right-handed alpha
Helix 130
AO4
D
41 50Right-handed alpha
Helix 131
AO5
D
125 137Right-handed alpha
Helix 132
AO6
D
158 176Right-handed alpha
Helix 133
AO7
D
187 202Right-handed alpha
Helix 134
AO8
D
273 287Right-handed alpha
Helix 135
AO9
D
309 322Right-handed alpha
Helix 136
AP1
D
334 343Right-handed alpha
Helix 137
AP2
D
351 362Right-handed alpha
Helix 138
AP3
D
362 369Right-handed alpha
Helix 139
AP4
D
370 386Right-handed alpha
Helix 140
AP5
D
403 419Right-handed alpha
Helix 141
AP6
D
425 437Right-handed alpha
Helix 142
AP7
D
438 445Right-handed alpha
Helix 143
AP8
D
458 468Right-handed alpha
Helix 144
AP9
D
470 480Right-handed alpha
Helix 145
AQ1
D
483 488Right-handed alpha
Helix 146
AQ2
D
489 499Right-handed alpha
Helix 147
AQ3
D
502 517Right-handed alpha
Helix 148
AQ4
D
518 533Right-handed alpha
Helix 149
AQ5
D
559 571Right-handed alpha
Helix 150
AQ6
D
573 584Right-handed alpha
Helix 151
AQ7
D
587 604Right-handed alpha
Helix 152
AQ8
D
607 636Right-handed alpha
Helix 153
AQ9
D
637 645Right-handed alpha
Helix 154
AR1
D
655 664Right-handed alpha
Helix 155
AR2
D
665 670Right-handed alpha
Helix 156
AR3
D
671 684Right-handed alpha
Helix 157
AR4
D
691 701Right-handed alpha
Helix 158
AR5
D
702 708Right-handed 310
Helix 159
AR6
D
723 733Right-handed alpha
Helix 160
AR7
D
733 758Right-handed alpha
Helix 161
AR8
D
765 790Right-handed alpha
Helix 162
AR9
D
791 795Right-handed 310
Helix 163
AS1
D
796 817Right-handed alpha
Helix 164
AS2
D
821 852Right-handed alpha
Helix 165
AS3
D
856 890Right-handed alpha
Helix 166
AS4
D
895 913Right-handed alpha
Helix 167
AS5
D
955 979Right-handed alpha
Helix 168
AS6
D
979 985Right-handed alpha
Helix 169
AS7
D
989 1008Right-handed alpha
Helix 170
AS8
D
1012 1029Right-handed alpha
Helix 171
AS9
D
1048 1075Right-handed alpha
Helix 172
AT1
D
1078 1104Right-handed alpha
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There are 4 sheets in PDB entry 8E4P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
259 263parallel
Strand 3
A
210 216parallel
Strand 4
A
178 181parallel
Strand 5
A
144 147parallel
Strand 6
A
301 304parallel
Strand 7
A
326 329parallel
Strand 8
A
391 393parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 119first strand
Strand 2
B
259 263parallel
Strand 3
B
210 216parallel
Strand 4
B
178 181parallel
Strand 5
B
144 147parallel
Strand 6
B
301 304parallel
Strand 7
B
326 329parallel
Strand 8
B
391 393parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 119first strand
Strand 2
C
259 263parallel
Strand 3
C
210 216parallel
Strand 4
C
178 181parallel
Strand 5
C
144 147parallel
Strand 6
C
301 304parallel
Strand 7
C
326 329parallel
Strand 8
C
391 393parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 119first strand
Strand 2
D
259 263parallel
Strand 3
D
210 216parallel
Strand 4
D
178 181parallel
Strand 5
D
144 147parallel
Strand 6
D
301 304parallel
Strand 7
D
326 329parallel
Strand 8
D
391 393parallel
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