Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E4Q entry

There are 4 chains in PDB entry 8E4Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 40	LYS 1103
B	ASP 40	LYS 1103
D	ASP 40	LYS 1103
C	ASP 40	LYS 1103

There are184 helices in PDB entry 8E4Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	50	Right-handed alpha
Helix 2	AA2	A	125	137	Right-handed alpha
Helix 3	AA3	A	160	176	Right-handed alpha
Helix 4	AA4	A	187	204	Right-handed alpha
Helix 5	AA5	A	274	288	Right-handed alpha
Helix 6	AA6	A	310	322	Right-handed alpha
Helix 7	AA7	A	334	343	Right-handed alpha
Helix 8	AA8	A	352	362	Right-handed alpha
Helix 9	AA9	A	362	369	Right-handed alpha
Helix 10	AB1	A	370	387	Right-handed alpha
Helix 11	AB2	A	402	419	Right-handed alpha
Helix 12	AB3	A	420	425	Right-handed alpha
Helix 13	AB4	A	425	436	Right-handed alpha
Helix 14	AB5	A	439	447	Right-handed alpha
Helix 15	AB6	A	454	468	Right-handed alpha
Helix 16	AB7	A	470	480	Right-handed alpha
Helix 17	AB8	A	483	488	Right-handed alpha
Helix 18	AB9	A	489	499	Right-handed alpha
Helix 19	AC1	A	502	516	Right-handed alpha
Helix 20	AC2	A	518	533	Right-handed alpha
Helix 21	AC3	A	559	571	Right-handed alpha
Helix 22	AC4	A	573	584	Right-handed alpha
Helix 23	AC5	A	586	603	Right-handed alpha
Helix 24	AC6	A	607	636	Right-handed alpha
Helix 25	AC7	A	636	645	Right-handed alpha
Helix 26	AC8	A	656	664	Right-handed alpha
Helix 27	AC9	A	665	671	Right-handed alpha
Helix 28	AD1	A	671	684	Right-handed alpha
Helix 29	AD2	A	691	701	Right-handed alpha
Helix 30	AD3	A	703	708	Right-handed alpha
Helix 31	AD4	A	722	733	Right-handed alpha
Helix 32	AD5	A	733	759	Right-handed alpha
Helix 33	AD6	A	765	789	Right-handed alpha
Helix 34	AD7	A	792	795	Right-handed 310
Helix 35	AD8	A	796	817	Right-handed alpha
Helix 36	AD9	A	820	852	Right-handed alpha
Helix 37	AE1	A	855	889	Right-handed alpha
Helix 38	AE2	A	894	905	Right-handed alpha
Helix 39	AE3	A	905	911	Right-handed alpha
Helix 40	AE4	A	954	979	Right-handed alpha
Helix 41	AE5	A	980	982	Right-handed 310
Helix 42	AE6	A	988	1008	Right-handed alpha
Helix 43	AE7	A	1011	1013	Right-handed 310
Helix 44	AE8	A	1014	1026	Right-handed alpha
Helix 45	AE9	A	1045	1069	Right-handed alpha
Helix 46	AF1	A	1077	1103	Right-handed alpha
Helix 47	AF2	B	41	50	Right-handed alpha
Helix 48	AF3	B	125	137	Right-handed alpha
Helix 49	AF4	B	160	176	Right-handed alpha
Helix 50	AF5	B	187	204	Right-handed alpha
Helix 51	AF6	B	274	288	Right-handed alpha
Helix 52	AF7	B	310	322	Right-handed alpha
Helix 53	AF8	B	334	343	Right-handed alpha
Helix 54	AF9	B	352	362	Right-handed alpha
Helix 55	AG1	B	362	369	Right-handed alpha
Helix 56	AG2	B	370	387	Right-handed alpha
Helix 57	AG3	B	402	419	Right-handed alpha
Helix 58	AG4	B	420	425	Right-handed alpha
Helix 59	AG5	B	425	436	Right-handed alpha
Helix 60	AG6	B	439	447	Right-handed alpha
Helix 61	AG7	B	454	468	Right-handed alpha
Helix 62	AG8	B	470	480	Right-handed alpha
Helix 63	AG9	B	483	488	Right-handed alpha
Helix 64	AH1	B	489	499	Right-handed alpha
Helix 65	AH2	B	502	516	Right-handed alpha
Helix 66	AH3	B	518	533	Right-handed alpha
Helix 67	AH4	B	559	571	Right-handed alpha
Helix 68	AH5	B	573	584	Right-handed alpha
Helix 69	AH6	B	586	603	Right-handed alpha
Helix 70	AH7	B	607	636	Right-handed alpha
Helix 71	AH8	B	636	645	Right-handed alpha
Helix 72	AH9	B	656	664	Right-handed alpha
Helix 73	AI1	B	665	671	Right-handed alpha
Helix 74	AI2	B	671	684	Right-handed alpha
Helix 75	AI3	B	691	701	Right-handed alpha
Helix 76	AI4	B	703	708	Right-handed alpha
Helix 77	AI5	B	722	733	Right-handed alpha
Helix 78	AI6	B	733	759	Right-handed alpha
Helix 79	AI7	B	765	789	Right-handed alpha
Helix 80	AI8	B	792	795	Right-handed 310
Helix 81	AI9	B	796	817	Right-handed alpha
Helix 82	AJ1	B	820	852	Right-handed alpha
Helix 83	AJ2	B	855	889	Right-handed alpha
Helix 84	AJ3	B	894	905	Right-handed alpha
Helix 85	AJ4	B	905	911	Right-handed alpha
Helix 86	AJ5	B	954	979	Right-handed alpha
Helix 87	AJ6	B	980	982	Right-handed 310
Helix 88	AJ7	B	988	1008	Right-handed alpha
Helix 89	AJ8	B	1011	1013	Right-handed 310
Helix 90	AJ9	B	1014	1026	Right-handed alpha
Helix 91	AK1	B	1045	1069	Right-handed alpha
Helix 92	AK2	B	1077	1103	Right-handed alpha
Helix 93	AK3	D	41	50	Right-handed alpha
Helix 94	AK4	D	125	137	Right-handed alpha
Helix 95	AK5	D	160	176	Right-handed alpha
Helix 96	AK6	D	187	204	Right-handed alpha
Helix 97	AK7	D	274	288	Right-handed alpha
Helix 98	AK8	D	310	322	Right-handed alpha
Helix 99	AK9	D	334	343	Right-handed alpha
Helix 100	AL1	D	352	362	Right-handed alpha
Helix 101	AL2	D	362	369	Right-handed alpha
Helix 102	AL3	D	370	387	Right-handed alpha
Helix 103	AL4	D	402	419	Right-handed alpha
Helix 104	AL5	D	420	425	Right-handed alpha
Helix 105	AL6	D	425	436	Right-handed alpha
Helix 106	AL7	D	439	447	Right-handed alpha
Helix 107	AL8	D	454	468	Right-handed alpha
Helix 108	AL9	D	470	480	Right-handed alpha
Helix 109	AM1	D	483	488	Right-handed alpha
Helix 110	AM2	D	489	499	Right-handed alpha
Helix 111	AM3	D	502	516	Right-handed alpha
Helix 112	AM4	D	518	533	Right-handed alpha
Helix 113	AM5	D	559	571	Right-handed alpha
Helix 114	AM6	D	573	584	Right-handed alpha
Helix 115	AM7	D	586	603	Right-handed alpha
Helix 116	AM8	D	607	636	Right-handed alpha
Helix 117	AM9	D	636	645	Right-handed alpha
Helix 118	AN1	D	656	664	Right-handed alpha
Helix 119	AN2	D	665	671	Right-handed alpha
Helix 120	AN3	D	671	684	Right-handed alpha
Helix 121	AN4	D	691	701	Right-handed alpha
Helix 122	AN5	D	703	708	Right-handed alpha
Helix 123	AN6	D	722	733	Right-handed alpha
Helix 124	AN7	D	733	759	Right-handed alpha
Helix 125	AN8	D	765	789	Right-handed alpha
Helix 126	AN9	D	792	795	Right-handed 310
Helix 127	AO1	D	796	817	Right-handed alpha
Helix 128	AO2	D	820	852	Right-handed alpha
Helix 129	AO3	D	855	889	Right-handed alpha
Helix 130	AO4	D	894	905	Right-handed alpha
Helix 131	AO5	D	905	911	Right-handed alpha
Helix 132	AO6	D	954	979	Right-handed alpha
Helix 133	AO7	D	980	982	Right-handed 310
Helix 134	AO8	D	988	1008	Right-handed alpha
Helix 135	AO9	D	1011	1013	Right-handed 310
Helix 136	AP1	D	1014	1026	Right-handed alpha
Helix 137	AP2	D	1045	1069	Right-handed alpha
Helix 138	AP3	D	1077	1103	Right-handed alpha
Helix 139	AP4	C	41	50	Right-handed alpha
Helix 140	AP5	C	125	137	Right-handed alpha
Helix 141	AP6	C	160	176	Right-handed alpha
Helix 142	AP7	C	187	204	Right-handed alpha
Helix 143	AP8	C	274	288	Right-handed alpha
Helix 144	AP9	C	310	322	Right-handed alpha
Helix 145	AQ1	C	334	343	Right-handed alpha
Helix 146	AQ2	C	352	362	Right-handed alpha
Helix 147	AQ3	C	362	369	Right-handed alpha
Helix 148	AQ4	C	370	387	Right-handed alpha
Helix 149	AQ5	C	402	419	Right-handed alpha
Helix 150	AQ6	C	420	425	Right-handed alpha
Helix 151	AQ7	C	425	436	Right-handed alpha
Helix 152	AQ8	C	439	447	Right-handed alpha
Helix 153	AQ9	C	454	468	Right-handed alpha
Helix 154	AR1	C	470	480	Right-handed alpha
Helix 155	AR2	C	483	488	Right-handed alpha
Helix 156	AR3	C	489	499	Right-handed alpha
Helix 157	AR4	C	502	516	Right-handed alpha
Helix 158	AR5	C	518	533	Right-handed alpha
Helix 159	AR6	C	559	571	Right-handed alpha
Helix 160	AR7	C	573	584	Right-handed alpha
Helix 161	AR8	C	586	603	Right-handed alpha
Helix 162	AR9	C	607	636	Right-handed alpha
Helix 163	AS1	C	636	645	Right-handed alpha
Helix 164	AS2	C	656	664	Right-handed alpha
Helix 165	AS3	C	665	671	Right-handed alpha
Helix 166	AS4	C	671	684	Right-handed alpha
Helix 167	AS5	C	691	701	Right-handed alpha
Helix 168	AS6	C	703	708	Right-handed alpha
Helix 169	AS7	C	722	733	Right-handed alpha
Helix 170	AS8	C	733	759	Right-handed alpha
Helix 171	AS9	C	765	789	Right-handed alpha
Helix 172	AT1	C	792	795	Right-handed 310
Helix 173	AT2	C	796	817	Right-handed alpha
Helix 174	AT3	C	820	852	Right-handed alpha
Helix 175	AT4	C	855	889	Right-handed alpha
Helix 176	AT5	C	894	905	Right-handed alpha
Helix 177	AT6	C	905	911	Right-handed alpha
Helix 178	AT7	C	954	979	Right-handed alpha
Helix 179	AT8	C	980	982	Right-handed 310
Helix 180	AT9	C	988	1008	Right-handed alpha
Helix 181	AU1	C	1011	1013	Right-handed 310
Helix 182	AU2	C	1014	1026	Right-handed alpha
Helix 183	AU3	C	1045	1069	Right-handed alpha
Helix 184	AU4	C	1077	1103	Right-handed alpha

There are 12 sheets in PDB entry 8E4Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	260	263	parallel
Strand 3	A	213	216	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	144	148	parallel
Strand 3	A	301	305	parallel
Strand 4	A	326	328	parallel
Strand 5	A	392	393	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	647	648	first strand
Strand 2	A	654	655	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	260	263	parallel
Strand 3	B	213	216	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	180	first strand
Strand 2	B	144	148	parallel
Strand 3	B	301	305	parallel
Strand 4	B	326	328	parallel
Strand 5	B	392	393	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	647	648	first strand
Strand 2	B	654	655	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	260	263	parallel
Strand 3	D	213	216	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	180	first strand
Strand 2	D	144	148	parallel
Strand 3	D	301	305	parallel
Strand 4	D	326	328	parallel
Strand 5	D	392	393	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	647	648	first strand
Strand 2	D	654	655	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	260	263	parallel
Strand 3	C	213	216	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	180	first strand
Strand 2	C	144	148	parallel
Strand 3	C	301	305	parallel
Strand 4	C	326	328	parallel
Strand 5	C	392	393	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	647	648	first strand
Strand 2	C	654	655	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E4Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4Q