Analysis of interatomic Contacts of Structural Units in PDB entry:
8E4Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E4Y entry

There is 1 chain in PDB entry 8E4Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 87LEU 828
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 31 helices in PDB entry 8E4Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
103 109Right-handed alpha
Helix 2
AA2
A
109 116Right-handed alpha
Helix 3
AA3
A
128 135Right-handed alpha
Helix 4
AA4
A
136 151Right-handed alpha
Helix 5
AA5
A
162 176Right-handed alpha
Helix 6
AA6
A
182 201Right-handed alpha
Helix 7
AA7
A
208 220Right-handed alpha
Helix 8
AA8
A
234 245Right-handed alpha
Helix 9
AA9
A
258 260Right-handed 310
Helix 10
AB1
A
263 271Right-handed alpha
Helix 11
AB2
A
289 306Right-handed alpha
Helix 12
AB3
A
331 341Right-handed alpha
Helix 13
AB4
A
364 370Right-handed alpha
Helix 14
AB5
A
380 391Right-handed alpha
Helix 15
AB6
A
406 416Right-handed alpha
Helix 16
AB7
A
423 433Right-handed alpha
Helix 17
AB8
A
457 480Right-handed alpha
Helix 18
AB9
A
483 495Right-handed alpha
Helix 19
AC1
A
502 519Right-handed alpha
Helix 20
AC2
A
528 540Right-handed alpha
Helix 21
AC3
A
562 574Right-handed alpha
Helix 22
AC4
A
576 595Right-handed alpha
Helix 23
AC5
A
612 626Right-handed alpha
Helix 24
AC6
A
638 653Right-handed alpha
Helix 25
AC7
A
711 725Right-handed alpha
Helix 26
AC8
A
725 739Right-handed alpha
Helix 27
AC9
A
740 742Right-handed 310
Helix 28
AD1
A
748 765Right-handed alpha
Helix 29
AD2
A
770 775Right-handed 310
Helix 30
AD3
A
776 790Right-handed alpha
Helix 31
AD4
A
811 824Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8E4Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
396 400parallel
Strand 4
A
348 356anti-parallel
Strand 5
A
224 228parallel
Strand 6
A
310 311parallel
Strand 7
A
252 256parallel
Strand 8
A
273 276parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
204 207anti-parallel
Strand 3
A
396 400parallel
Strand 4
A
348 356anti-parallel
Strand 5
A
404 405anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
555 559anti-parallel
Strand 3
A
544 548anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 611first strand
Strand 2
A
705 708anti-parallel
Strand 3
A
656 658anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
746 747first strand
Strand 2
A
801 805anti-parallel
Strand 3
A
792 796anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il