Analysis of interatomic Contacts of Structural Units in PDB entry:
8E5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E5A entry

There are 3 chains in PDB entry 8E5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 121	LEU 1589
D	PHE 27	GLY 1076
C	GLU 38	HIS 361

There are107 helices in PDB entry 8E5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	128	143	Right-handed alpha
Helix 2	AA2	A	149	153	Right-handed 310
Helix 3	AA3	A	155	175	Right-handed alpha
Helix 4	AA4	A	195	217	Right-handed alpha
Helix 5	AA5	A	235	244	Right-handed 310
Helix 6	AA6	A	245	254	Right-handed alpha
Helix 7	AA7	A	254	266	Right-handed alpha
Helix 8	AA8	A	267	270	Right-handed 310
Helix 9	AA9	A	271	293	Right-handed alpha
Helix 10	AB1	A	349	362	Right-handed alpha
Helix 11	AB2	A	365	377	Right-handed alpha
Helix 12	AB3	A	381	394	Right-handed alpha
Helix 13	AB4	A	394	418	Right-handed alpha
Helix 14	AB5	A	420	441	Right-handed alpha
Helix 15	AB6	A	516	520	Right-handed 310
Helix 16	AB7	A	522	541	Right-handed alpha
Helix 17	AB8	A	548	573	Right-handed alpha
Helix 18	AB9	A	578	583	Right-handed alpha
Helix 19	AC1	A	585	607	Right-handed alpha
Helix 20	AC2	A	611	623	Right-handed alpha
Helix 21	AC3	A	624	630	Right-handed 310
Helix 22	AC4	A	636	646	Right-handed alpha
Helix 23	AC5	A	646	672	Right-handed alpha
Helix 24	AC6	A	690	704	Right-handed alpha
Helix 25	AC7	A	706	717	Right-handed alpha
Helix 26	AC8	A	724	728	Right-handed 310
Helix 27	AC9	A	729	747	Right-handed alpha
Helix 28	AD1	A	754	768	Right-handed alpha
Helix 29	AD2	A	877	884	Right-handed alpha
Helix 30	AD3	A	887	904	Right-handed alpha
Helix 31	AD4	A	913	940	Right-handed alpha
Helix 32	AD5	A	954	970	Right-handed alpha
Helix 33	AD6	A	980	987	Right-handed alpha
Helix 34	AD7	A	988	995	Right-handed 310
Helix 35	AD8	A	998	1015	Right-handed alpha
Helix 36	AD9	A	1016	1037	Right-handed alpha
Helix 37	AE1	A	1064	1066	Right-handed 310
Helix 38	AE2	A	1086	1099	Right-handed alpha
Helix 39	AE3	A	1102	1112	Right-handed alpha
Helix 40	AE4	A	1125	1127	Right-handed 310
Helix 41	AE5	A	1128	1139	Right-handed alpha
Helix 42	AE6	A	1141	1159	Right-handed alpha
Helix 43	AE7	A	1171	1176	Right-handed alpha
Helix 44	AE8	A	1176	1181	Right-handed alpha
Helix 45	AE9	A	1192	1203	Right-handed alpha
Helix 46	AF1	A	1204	1223	Right-handed alpha
Helix 47	AF2	A	1230	1257	Right-handed alpha
Helix 48	AF3	A	1260	1265	Right-handed alpha
Helix 49	AF4	A	1267	1284	Right-handed alpha
Helix 50	AF5	A	1285	1287	Right-handed 310
Helix 51	AF6	A	1319	1323	Right-handed 310
Helix 52	AF7	A	1336	1348	Right-handed alpha
Helix 53	AF8	A	1350	1373	Right-handed alpha
Helix 54	AF9	A	1391	1404	Right-handed alpha
Helix 55	AG1	A	1407	1415	Right-handed alpha
Helix 56	AG2	A	1439	1465	Right-handed alpha
Helix 57	AG3	A	1466	1471	Right-handed alpha
Helix 58	AG4	A	1478	1490	Right-handed alpha
Helix 59	AG5	A	1504	1511	Right-handed alpha
Helix 60	AG6	A	1526	1534	Right-handed alpha
Helix 61	AG7	A	1546	1558	Right-handed alpha
Helix 62	AG8	A	1565	1576	Right-handed alpha
Helix 63	AG9	A	1584	1589	Right-handed alpha
Helix 64	AH1	D	29	52	Right-handed alpha
Helix 65	AH2	D	53	63	Right-handed alpha
Helix 66	AH3	D	74	110	Right-handed alpha
Helix 67	AH4	D	176	186	Right-handed alpha
Helix 68	AH5	D	188	200	Right-handed alpha
Helix 69	AH6	D	237	240	Right-handed 310
Helix 70	AH7	D	241	249	Right-handed alpha
Helix 71	AH8	D	261	265	Right-handed 310
Helix 72	AH9	D	266	281	Right-handed alpha
Helix 73	AI1	D	311	323	Right-handed alpha
Helix 74	AI2	D	332	344	Right-handed alpha
Helix 75	AI3	D	369	377	Right-handed alpha
Helix 76	AI4	D	396	406	Right-handed alpha
Helix 77	AI5	D	415	417	Right-handed 310
Helix 78	AI6	D	418	423	Right-handed alpha
Helix 79	AI7	D	425	431	Right-handed alpha
Helix 80	AI8	D	431	438	Right-handed alpha
Helix 81	AI9	D	439	442	Right-handed 310
Helix 82	AJ1	D	494	500	Right-handed alpha
Helix 83	AJ2	D	560	565	Right-handed alpha
Helix 84	AJ3	D	568	580	Right-handed alpha
Helix 85	AJ4	D	638	646	Right-handed alpha
Helix 86	AJ5	D	647	651	Right-handed 310
Helix 87	AJ6	D	652	657	Right-handed alpha
Helix 88	AJ7	D	677	689	Right-handed alpha
Helix 89	AJ8	D	699	719	Right-handed alpha
Helix 90	AJ9	D	745	752	Right-handed 310
Helix 91	AK1	D	757	760	Right-handed 310
Helix 92	AK2	D	761	770	Right-handed alpha
Helix 93	AK3	D	817	827	Right-handed alpha
Helix 94	AK4	D	865	870	Right-handed alpha
Helix 95	AK5	D	874	878	Right-handed 310
Helix 96	AK6	D	879	889	Right-handed alpha
Helix 97	AK7	C	39	56	Right-handed alpha
Helix 98	AK8	C	120	132	Right-handed alpha
Helix 99	AK9	C	155	159	Right-handed 310
Helix 100	AL1	C	190	208	Right-handed alpha
Helix 101	AL2	C	246	263	Right-handed alpha
Helix 102	AL3	C	276	281	Right-handed 310
Helix 103	AL4	C	296	306	Right-handed alpha
Helix 104	AL5	C	308	314	Right-handed alpha
Helix 105	AL6	C	314	328	Right-handed alpha
Helix 106	AL7	C	329	333	Right-handed 310
Helix 107	AL8	C	341	360	Right-handed alpha

There are 16 sheets in PDB entry 8E5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	331	333	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1058	1062	first strand
Strand 2	A	1070	1074	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1499	1500	first strand
Strand 2	A	1544	1545	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	68	72	first strand
Strand 2	D	629	633	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	142	143	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	165	167	parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	206	210	anti-parallel
Strand 5	D	484	493	anti-parallel
Strand 6	D	458	467	anti-parallel
Strand 7	D	445	446	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	165	167	parallel
Strand 3	D	215	218	anti-parallel
Strand 4	D	206	210	anti-parallel
Strand 5	D	484	493	anti-parallel
Strand 6	D	458	467	anti-parallel
Strand 7	D	450	451	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	151	first strand
Strand 2	D	158	159	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	300	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	252	259	parallel
Strand 4	D	355	362	parallel
Strand 5	D	383	389	parallel
Strand 6	D	410	413	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	521	523	first strand
Strand 2	D	511	515	anti-parallel
Strand 3	D	618	624	anti-parallel
Strand 4	D	600	611	anti-parallel
Strand 5	D	584	593	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	741	743	anti-parallel
Strand 3	D	729	736	anti-parallel
Strand 4	D	810	816	anti-parallel
Strand 5	D	792	797	anti-parallel
Strand 6	D	774	776	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	801	first strand
Strand 2	D	806	807	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	861	first strand
Strand 2	D	848	854	anti-parallel
Strand 3	D	1013	1019	anti-parallel
Strand 4	D	1001	1007	anti-parallel
Strand 5	D	989	994	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	904	first strand
Strand 2	D	972	983	anti-parallel
Strand 3	D	1036	1038	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	65	first strand
Strand 2	C	92	98	anti-parallel
Strand 3	C	103	108	anti-parallel
Strand 4	C	115	119	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	266	269	parallel
Strand 3	C	180	183	parallel
Strand 4	C	288	292	parallel
Strand 5	C	335	337	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E5A