Analysis of interatomic Contacts of Structural Units in PDB entry:
8E5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E5F entry

There is 1 chain in PDB entry 8E5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 24GLY 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8E5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 84Right-handed alpha
Helix 2
AA2
A
89 97Right-handed alpha
Helix 3
AA3
A
101 103Right-handed 310
Helix 4
AA4
A
104 112Right-handed alpha
Helix 5
AA5
A
179 190Right-handed alpha
Helix 6
AA6
A
224 226Right-handed 310
Helix 7
AA7
A
283 287Right-handed 310
Helix 8
AA8
A
288 293Right-handed alpha
Helix 9
AA9
A
302 307Right-handed 310
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There are 3 sheets in PDB entry 8E5F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
69 71anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 176first strand
Strand 2
A
161 166anti-parallel
Strand 3
A
130 135anti-parallel
Strand 4
A
117 122anti-parallel
Strand 5
A
265 271anti-parallel
Strand 6
A
276 278anti-parallel
Strand 7
A
193 195parallel
Strand 8
A
221 222anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
209 211anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il