Analysis of interatomic Contacts of Structural Units in PDB entry:
8E5I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E5I entry

There is 1 chain in PDB entry 8E5I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2ALA 360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8E5I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 46Right-handed alpha
Helix 2
AA2
A
74 91Right-handed alpha
Helix 3
AA3
A
102 106Right-handed 310
Helix 4
AA4
A
107 111Right-handed 310
Helix 5
AA5
A
145 147Right-handed 310
Helix 6
AA6
A
148 166Right-handed alpha
Helix 7
AA7
A
179 186Right-handed alpha
Helix 8
AA8
A
199 204Right-handed alpha
Helix 9
AA9
A
204 219Right-handed alpha
Helix 10
AB1
A
240 252Right-handed alpha
Helix 11
AB2
A
253 256Right-handed 310
Helix 12
AB3
A
275 283Right-handed alpha
Helix 13
AB4
A
294 304Right-handed alpha
Helix 14
AB5
A
313 319Right-handed alpha
Helix 15
AB6
A
321 329Right-handed alpha
Helix 16
AB7
A
336 340Right-handed 310
Helix 17
AB8
A
353 358Right-handed alpha
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There are 3 sheets in PDB entry 8E5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
13 15anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
52 58parallel
Strand 3
A
95 100parallel
Strand 4
A
170 175parallel
Strand 5
A
223 227parallel
Strand 6
A
259 263parallel
Strand 7
A
287 290parallel
Strand 8
A
309 312parallel
Strand 9
A
19 21parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
142 143parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il