Analysis of interatomic Contacts of Structural Units in PDB entry:
8E62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E62 entry

There are 6 chains in PDB entry 8E62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4ARG 185
B
 MET 1ARG 185
C
 ASN 4ARG 186
D
 ASN 2ARG 185
E
 ASN 4ARG 186
F
 ASN 4ARG 186
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8E62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 169Right-handed alpha
Helix 2
AA2
A
171 185Right-handed alpha
Helix 3
AA3
B
171 184Right-handed alpha
Helix 4
AA4
C
161 169Right-handed alpha
Helix 5
AA5
C
171 184Right-handed alpha
Helix 6
AA6
D
176 184Right-handed alpha
Helix 7
AA7
E
161 169Right-handed alpha
Helix 8
AA8
E
171 184Right-handed alpha
Helix 9
AA9
F
161 169Right-handed alpha
Helix 10
AB1
F
171 186Right-handed alpha
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There are 18 sheets in PDB entry 8E62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
24 25parallel
Strand 3
A
55 56parallel
Strand 4
A
77 78parallel
Strand 5
A
95 96parallel
Strand 6
A
113 114parallel
Strand 7
A
131 132parallel
Strand 8
A
148 151parallel
Strand 9
A
156 160anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
30 31parallel
Strand 3
A
61 62parallel
Strand 4
A
83 84parallel
Strand 5
A
101 102parallel
Strand 6
A
119 120parallel
Strand 7
A
137 138parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
48 50parallel
Strand 3
A
70 72parallel
Strand 4
A
89 90parallel
Strand 5
A
107 108parallel
Strand 6
A
125 126parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
24 25parallel
Strand 3
B
55 56parallel
Strand 4
B
77 78parallel
Strand 5
B
95 96parallel
Strand 6
B
113 114parallel
Strand 7
B
131 132parallel
Strand 8
B
148 151parallel
Strand 9
B
156 160anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 13first strand
Strand 2
B
30 31parallel
Strand 3
B
61 62parallel
Strand 4
B
83 84parallel
Strand 5
B
101 102parallel
Strand 6
B
119 120parallel
Strand 7
B
137 138parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
48 50parallel
Strand 3
B
70 72parallel
Strand 4
B
89 90parallel
Strand 5
B
107 108parallel
Strand 6
B
125 126parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
24 25parallel
Strand 3
C
55 56parallel
Strand 4
C
77 78parallel
Strand 5
C
95 96parallel
Strand 6
C
113 114parallel
Strand 7
C
131 132parallel
Strand 8
C
148 151parallel
Strand 9
C
156 160anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 13first strand
Strand 2
C
30 31parallel
Strand 3
C
61 62parallel
Strand 4
C
83 84parallel
Strand 5
C
101 102parallel
Strand 6
C
119 120parallel
Strand 7
C
137 138parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 19first strand
Strand 2
C
48 50parallel
Strand 3
C
70 72parallel
Strand 4
C
89 90parallel
Strand 5
C
107 108parallel
Strand 6
C
125 126parallel
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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
24 25parallel
Strand 3
D
55 56parallel
Strand 4
D
77 78parallel
Strand 5
D
95 96parallel
Strand 6
D
113 114parallel
Strand 7
D
131 132parallel
Strand 8
D
148 151parallel
Strand 9
D
156 160anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 13first strand
Strand 2
D
30 31parallel
Strand 3
D
61 62parallel
Strand 4
D
83 84parallel
Strand 5
D
101 102parallel
Strand 6
D
119 120parallel
Strand 7
D
137 138parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 19first strand
Strand 2
D
48 50parallel
Strand 3
D
70 72parallel
Strand 4
D
89 90parallel
Strand 5
D
107 108parallel
Strand 6
D
125 126parallel
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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 7first strand
Strand 2
E
24 25parallel
Strand 3
E
55 56parallel
Strand 4
E
77 78parallel
Strand 5
E
95 96parallel
Strand 6
E
113 114parallel
Strand 7
E
131 132parallel
Strand 8
E
148 151parallel
Strand 9
E
156 160anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 13first strand
Strand 2
E
30 31parallel
Strand 3
E
61 62parallel
Strand 4
E
83 84parallel
Strand 5
E
101 102parallel
Strand 6
E
119 120parallel
Strand 7
E
137 138parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
18 19first strand
Strand 2
E
48 50parallel
Strand 3
E
70 72parallel
Strand 4
E
89 90parallel
Strand 5
E
107 108parallel
Strand 6
E
125 126parallel
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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
6 7first strand
Strand 2
F
24 25parallel
Strand 3
F
55 56parallel
Strand 4
F
77 78parallel
Strand 5
F
95 96parallel
Strand 6
F
113 114parallel
Strand 7
F
131 132parallel
Strand 8
F
148 151parallel
Strand 9
F
156 160anti-parallel
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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 13first strand
Strand 2
F
30 31parallel
Strand 3
F
61 62parallel
Strand 4
F
83 84parallel
Strand 5
F
101 102parallel
Strand 6
F
119 120parallel
Strand 7
F
137 138parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
18 19first strand
Strand 2
F
48 50parallel
Strand 3
F
70 72parallel
Strand 4
F
89 90parallel
Strand 5
F
107 108parallel
Strand 6
F
125 126parallel
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