Analysis of interatomic Contacts of Structural Units in PDB entry:
8E67


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E67 entry

There are 12 chains in PDB entry 8E67 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A 1 G 15
C
 T 1 T 15
A
 ILE 331MET 423
D
 A 1 G 15
E
 T 1 T 15
F
 ARG 330ARG 426
G
 A 3 G 15
H
 T 1 T 14
I
 ILE 331SER 424
J
 A 1 G 15
K
 T 1 T 15
L
 ASP 333SER 424
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8E67. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
336 345Right-handed alpha
Helix 2
AA2
A
346 351Right-handed 310
Helix 3
AA3
A
368 380Right-handed alpha
Helix 4
AA4
A
386 400Right-handed alpha
Helix 5
AA5
A
418 423Right-handed alpha
Helix 6
AA6
F
336 346Right-handed alpha
Helix 7
AA7
F
347 351Right-handed 310
Helix 8
AA8
F
359 361Right-handed 310
Helix 9
AA9
F
368 380Right-handed alpha
Helix 10
AB1
F
386 400Right-handed alpha
Helix 11
AB2
F
418 424Right-handed alpha
Helix 12
AB3
I
336 347Right-handed alpha
Helix 13
AB4
I
348 351Right-handed 310
Helix 14
AB5
I
368 380Right-handed alpha
Helix 15
AB6
I
386 400Right-handed alpha
Helix 16
AB7
I
418 424Right-handed alpha
Helix 17
AB8
L
336 347Right-handed alpha
Helix 18
AB9
L
348 351Right-handed 310
Helix 19
AC1
L
368 380Right-handed alpha
Helix 20
AC2
L
386 397Right-handed alpha
Helix 21
AC3
L
418 423Right-handed alpha
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There are 4 sheets in PDB entry 8E67. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
363 366anti-parallel
Strand 3
A
412 415anti-parallel
Strand 4
A
403 405anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
354 358first strand
Strand 2
F
363 366anti-parallel
Strand 3
F
412 415anti-parallel
Strand 4
F
403 405anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
354 358first strand
Strand 2
I
363 366anti-parallel
Strand 3
I
412 415anti-parallel
Strand 4
I
403 405anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
355 358first strand
Strand 2
L
363 365anti-parallel
Strand 3
L
412 415anti-parallel
Strand 4
L
403 405anti-parallel
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