Analysis of interatomic Contacts of Structural Units in PDB entry:
8E77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E77 entry

There is 1 chain in PDB entry 8E77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8E77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 14Right-handed alpha
Helix 2
AA2
A
14 29Right-handed alpha
Helix 3
AA3
A
34 49Right-handed alpha
Helix 4
AA4
A
58 69Right-handed alpha
Helix 5
AA5
A
86 95Right-handed alpha
Helix 6
AA6
A
112 114Right-handed 310
Helix 7
AA7
A
115 120Right-handed alpha
Helix 8
AA8
A
132 135Right-handed 310
Helix 9
AA9
A
138 149Right-handed alpha
Helix 10
AB1
A
200 211Right-handed alpha
Helix 11
AB2
A
231 266Right-handed alpha
Helix 12
AB3
A
291 302Right-handed alpha
Helix 13
AB4
A
313 321Right-handed 310
Helix 14
AB5
A
327 334Right-handed alpha
Helix 15
AB6
A
347 356Right-handed alpha
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There are 4 sheets in PDB entry 8E77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 56first strand
Strand 2
A
194 198anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
153 156parallel
Strand 5
A
124 130parallel
Strand 6
A
77 81parallel
Strand 7
A
98 102parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
164 165anti-parallel
Strand 3
A
278 279anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
337 340anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il