Analysis of interatomic Contacts of Structural Units in PDB entry:
8E78

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E78 entry

There are 4 chains in PDB entry 8E78 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	VAL 556
B	ARG 1	VAL 556
C	ARG 1	VAL 556
D	ARG 1	VAL 556

There are124 helices in PDB entry 8E78. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	8	Right-handed 310
Helix 2	AA2	A	13	17	Right-handed 310
Helix 3	AA3	A	18	25	Right-handed alpha
Helix 4	AA4	A	37	50	Right-handed alpha
Helix 5	AA5	A	54	69	Right-handed alpha
Helix 6	AA6	A	69	80	Right-handed alpha
Helix 7	AA7	A	80	89	Right-handed alpha
Helix 8	AA8	A	91	99	Right-handed alpha
Helix 9	AA9	A	115	117	Right-handed 310
Helix 10	AB1	A	119	125	Right-handed alpha
Helix 11	AB2	A	149	153	Right-handed 310
Helix 12	AB3	A	154	167	Right-handed alpha
Helix 13	AB4	A	186	191	Right-handed alpha
Helix 14	AB5	A	205	224	Right-handed alpha
Helix 15	AB6	A	235	247	Right-handed alpha
Helix 16	AB7	A	257	276	Right-handed alpha
Helix 17	AB8	A	278	282	Right-handed 310
Helix 18	AB9	A	292	307	Right-handed alpha
Helix 19	AC1	A	310	317	Right-handed alpha
Helix 20	AC2	A	337	342	Right-handed 310
Helix 21	AC3	A	350	358	Right-handed alpha
Helix 22	AC4	A	374	385	Right-handed alpha
Helix 23	AC5	A	396	400	Right-handed 310
Helix 24	AC6	A	403	411	Right-handed alpha
Helix 25	AC7	A	440	443	Right-handed 310
Helix 26	AC8	A	444	456	Right-handed alpha
Helix 27	AC9	A	461	476	Right-handed alpha
Helix 28	AD1	A	477	483	Right-handed alpha
Helix 29	AD2	A	489	491	Right-handed 310
Helix 30	AD3	A	492	511	Right-handed alpha
Helix 31	AD4	A	522	529	Right-handed alpha
Helix 32	AD5	B	1	8	Right-handed 310
Helix 33	AD6	B	13	17	Right-handed 310
Helix 34	AD7	B	18	25	Right-handed alpha
Helix 35	AD8	B	37	50	Right-handed alpha
Helix 36	AD9	B	54	69	Right-handed alpha
Helix 37	AE1	B	69	80	Right-handed alpha
Helix 38	AE2	B	80	89	Right-handed alpha
Helix 39	AE3	B	91	99	Right-handed alpha
Helix 40	AE4	B	115	117	Right-handed 310
Helix 41	AE5	B	119	125	Right-handed alpha
Helix 42	AE6	B	149	153	Right-handed 310
Helix 43	AE7	B	154	167	Right-handed alpha
Helix 44	AE8	B	186	191	Right-handed alpha
Helix 45	AE9	B	205	224	Right-handed alpha
Helix 46	AF1	B	235	247	Right-handed alpha
Helix 47	AF2	B	257	276	Right-handed alpha
Helix 48	AF3	B	278	282	Right-handed 310
Helix 49	AF4	B	292	307	Right-handed alpha
Helix 50	AF5	B	310	317	Right-handed alpha
Helix 51	AF6	B	337	342	Right-handed 310
Helix 52	AF7	B	350	358	Right-handed alpha
Helix 53	AF8	B	374	385	Right-handed alpha
Helix 54	AF9	B	396	400	Right-handed 310
Helix 55	AG1	B	403	411	Right-handed alpha
Helix 56	AG2	B	440	443	Right-handed 310
Helix 57	AG3	B	444	456	Right-handed alpha
Helix 58	AG4	B	461	476	Right-handed alpha
Helix 59	AG5	B	477	483	Right-handed alpha
Helix 60	AG6	B	489	491	Right-handed 310
Helix 61	AG7	B	492	511	Right-handed alpha
Helix 62	AG8	B	522	529	Right-handed alpha
Helix 63	AG9	C	1	8	Right-handed 310
Helix 64	AH1	C	13	17	Right-handed 310
Helix 65	AH2	C	18	25	Right-handed alpha
Helix 66	AH3	C	37	50	Right-handed alpha
Helix 67	AH4	C	54	69	Right-handed alpha
Helix 68	AH5	C	69	80	Right-handed alpha
Helix 69	AH6	C	80	89	Right-handed alpha
Helix 70	AH7	C	91	99	Right-handed alpha
Helix 71	AH8	C	115	117	Right-handed 310
Helix 72	AH9	C	119	125	Right-handed alpha
Helix 73	AI1	C	149	153	Right-handed 310
Helix 74	AI2	C	154	167	Right-handed alpha
Helix 75	AI3	C	186	191	Right-handed alpha
Helix 76	AI4	C	205	224	Right-handed alpha
Helix 77	AI5	C	235	247	Right-handed alpha
Helix 78	AI6	C	257	276	Right-handed alpha
Helix 79	AI7	C	278	282	Right-handed 310
Helix 80	AI8	C	292	307	Right-handed alpha
Helix 81	AI9	C	310	317	Right-handed alpha
Helix 82	AJ1	C	337	342	Right-handed 310
Helix 83	AJ2	C	350	358	Right-handed alpha
Helix 84	AJ3	C	374	385	Right-handed alpha
Helix 85	AJ4	C	396	400	Right-handed 310
Helix 86	AJ5	C	403	411	Right-handed alpha
Helix 87	AJ6	C	440	443	Right-handed 310
Helix 88	AJ7	C	444	456	Right-handed alpha
Helix 89	AJ8	C	461	476	Right-handed alpha
Helix 90	AJ9	C	477	483	Right-handed alpha
Helix 91	AK1	C	489	491	Right-handed 310
Helix 92	AK2	C	492	511	Right-handed alpha
Helix 93	AK3	C	522	529	Right-handed alpha
Helix 94	AK4	D	1	8	Right-handed 310
Helix 95	AK5	D	13	17	Right-handed 310
Helix 96	AK6	D	18	25	Right-handed alpha
Helix 97	AK7	D	37	50	Right-handed alpha
Helix 98	AK8	D	54	69	Right-handed alpha
Helix 99	AK9	D	69	80	Right-handed alpha
Helix 100	AL1	D	80	89	Right-handed alpha
Helix 101	AL2	D	91	99	Right-handed alpha
Helix 102	AL3	D	115	117	Right-handed 310
Helix 103	AL4	D	119	125	Right-handed alpha
Helix 104	AL5	D	149	153	Right-handed 310
Helix 105	AL6	D	154	167	Right-handed alpha
Helix 106	AL7	D	186	191	Right-handed alpha
Helix 107	AL8	D	205	224	Right-handed alpha
Helix 108	AL9	D	235	247	Right-handed alpha
Helix 109	AM1	D	257	276	Right-handed alpha
Helix 110	AM2	D	278	282	Right-handed 310
Helix 111	AM3	D	292	307	Right-handed alpha
Helix 112	AM4	D	310	317	Right-handed alpha
Helix 113	AM5	D	337	342	Right-handed 310
Helix 114	AM6	D	350	358	Right-handed alpha
Helix 115	AM7	D	374	385	Right-handed alpha
Helix 116	AM8	D	396	400	Right-handed 310
Helix 117	AM9	D	403	411	Right-handed alpha
Helix 118	AN1	D	440	443	Right-handed 310
Helix 119	AN2	D	444	456	Right-handed alpha
Helix 120	AN3	D	461	476	Right-handed alpha
Helix 121	AN4	D	477	483	Right-handed alpha
Helix 122	AN5	D	489	491	Right-handed 310
Helix 123	AN6	D	492	511	Right-handed alpha
Helix 124	AN7	D	522	529	Right-handed alpha

There are 12 sheets in PDB entry 8E78. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	175	181	parallel
Strand 3	A	134	138	parallel
Strand 4	A	228	231	parallel
Strand 5	A	252	254	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	284	286	parallel
Strand 3	A	362	365	parallel
Strand 4	A	389	392	parallel
Strand 5	A	416	419	parallel
Strand 6	A	437	438	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	433	434	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	175	181	parallel
Strand 3	B	134	138	parallel
Strand 4	B	228	231	parallel
Strand 5	B	252	254	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	284	286	parallel
Strand 3	B	362	365	parallel
Strand 4	B	389	392	parallel
Strand 5	B	416	419	parallel
Strand 6	B	437	438	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	433	434	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	175	181	parallel
Strand 3	C	134	138	parallel
Strand 4	C	228	231	parallel
Strand 5	C	252	254	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	284	286	parallel
Strand 3	C	362	365	parallel
Strand 4	C	389	392	parallel
Strand 5	C	416	419	parallel
Strand 6	C	437	438	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	433	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	175	181	parallel
Strand 3	D	134	138	parallel
Strand 4	D	228	231	parallel
Strand 5	D	252	254	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	284	286	parallel
Strand 3	D	362	365	parallel
Strand 4	D	389	392	parallel
Strand 5	D	416	419	parallel
Strand 6	D	437	438	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E78

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E78