Analysis of interatomic Contacts of Structural Units in PDB entry:
8E79

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E79 entry

There are 9 chains in PDB entry 8E79 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	ASN 30	SER 1139
D	GLY -1	ALA 1282
E	GLY 28	GLY 109
N	LYS 6	GLN 117
O	A 9	C 45
P	G 110	T 146
R	C 7	U 42

There are105 helices in PDB entry 8E79. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	43	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	81	83	Right-handed 310
Helix 4	AA4	A	106	110	Right-handed 310
Helix 5	AA5	A	203	224	Right-handed alpha
Helix 6	AA6	B	29	34	Right-handed alpha
Helix 7	AA7	B	34	45	Right-handed alpha
Helix 8	AA8	B	72	82	Right-handed alpha
Helix 9	AA9	B	108	110	Right-handed 310
Helix 10	AB1	B	154	158	Right-handed 310
Helix 11	AB2	B	203	224	Right-handed alpha
Helix 12	AB3	C	54	66	Right-handed alpha
Helix 13	AB4	C	67	76	Right-handed alpha
Helix 14	AB5	C	84	94	Right-handed alpha
Helix 15	AB6	C	118	125	Right-handed alpha
Helix 16	AB7	C	234	241	Right-handed alpha
Helix 17	AB8	C	244	252	Right-handed alpha
Helix 18	AB9	C	255	264	Right-handed alpha
Helix 19	AC1	C	270	282	Right-handed alpha
Helix 20	AC2	C	288	301	Right-handed alpha
Helix 21	AC3	C	310	321	Right-handed alpha
Helix 22	AC4	C	334	351	Right-handed alpha
Helix 23	AC5	C	380	404	Right-handed alpha
Helix 24	AC6	C	413	417	Right-handed 310
Helix 25	AC7	C	420	433	Right-handed alpha
Helix 26	AC8	C	444	453	Right-handed alpha
Helix 27	AC9	C	464	468	Right-handed 310
Helix 28	AD1	C	476	480	Right-handed 310
Helix 29	AD2	C	532	539	Right-handed alpha
Helix 30	AD3	C	590	594	Right-handed 310
Helix 31	AD4	C	596	600	Right-handed 310
Helix 32	AD5	C	601	610	Right-handed alpha
Helix 33	AD6	C	630	639	Right-handed alpha
Helix 34	AD7	C	739	744	Right-handed alpha
Helix 35	AD8	C	854	858	Right-handed 310
Helix 36	AD9	C	921	926	Right-handed alpha
Helix 37	AE1	C	928	943	Right-handed alpha
Helix 38	AE2	C	953	957	Right-handed 310
Helix 39	AE3	C	981	991	Right-handed alpha
Helix 40	AE4	C	1036	1040	Right-handed 310
Helix 41	AE5	C	1069	1072	Right-handed 310
Helix 42	AE6	C	1073	1080	Right-handed alpha
Helix 43	AE7	C	1082	1090	Right-handed alpha
Helix 44	AE8	C	1095	1109	Right-handed alpha
Helix 45	AE9	C	1118	1131	Right-handed alpha
Helix 46	AF1	D	16	24	Right-handed alpha
Helix 47	AF2	D	48	53	Right-handed alpha
Helix 48	AF3	D	84	90	Right-handed 310
Helix 49	AF4	D	104	107	Right-handed 310
Helix 50	AF5	D	112	119	Right-handed alpha
Helix 51	AF6	D	121	129	Right-handed alpha
Helix 52	AF7	D	142	187	Right-handed alpha
Helix 53	AF8	D	190	228	Right-handed alpha
Helix 54	AF9	D	237	248	Right-handed alpha
Helix 55	AG1	D	257	267	Right-handed alpha
Helix 56	AG2	D	269	284	Right-handed alpha
Helix 57	AG3	D	285	305	Right-handed alpha
Helix 58	AG4	D	308	311	Right-handed 310
Helix 59	AG5	D	321	325	Right-handed 310
Helix 60	AG6	D	338	361	Right-handed alpha
Helix 61	AG7	D	363	383	Right-handed alpha
Helix 62	AG8	D	401	411	Right-handed 310
Helix 63	AG9	D	445	452	Right-handed alpha
Helix 64	AH1	D	452	463	Right-handed alpha
Helix 65	AH2	D	468	479	Right-handed alpha
Helix 66	AH3	D	481	492	Right-handed alpha
Helix 67	AH4	D	505	507	Right-handed 310
Helix 68	AH5	D	525	527	Right-handed 310
Helix 69	AH6	D	528	533	Right-handed alpha
Helix 70	AH7	D	548	554	Right-handed alpha
Helix 71	AH8	D	560	564	Right-handed 310
Helix 72	AH9	D	579	589	Right-handed alpha
Helix 73	AI1	D	614	623	Right-handed alpha
Helix 74	AI2	D	643	651	Right-handed alpha
Helix 75	AI3	D	668	675	Right-handed alpha
Helix 76	AI4	D	689	704	Right-handed alpha
Helix 77	AI5	D	705	725	Right-handed alpha
Helix 78	AI6	D	741	762	Right-handed alpha
Helix 79	AI7	D	766	793	Right-handed alpha
Helix 80	AI8	D	797	805	Right-handed alpha
Helix 81	AI9	D	810	819	Right-handed alpha
Helix 82	AJ1	D	845	881	Right-handed alpha
Helix 83	AJ2	D	945	956	Right-handed alpha
Helix 84	AJ3	D	964	968	Right-handed 310
Helix 85	AJ4	D	975	980	Right-handed alpha
Helix 86	AJ5	D	994	1003	Right-handed alpha
Helix 87	AJ6	D	1027	1036	Right-handed alpha
Helix 88	AJ7	D	1117	1126	Right-handed alpha
Helix 89	AJ8	D	1126	1145	Right-handed alpha
Helix 90	AJ9	D	1150	1162	Right-handed alpha
Helix 91	AK1	D	1183	1195	Right-handed alpha
Helix 92	AK2	D	1209	1216	Right-handed alpha
Helix 93	AK3	D	1219	1227	Right-handed alpha
Helix 94	AK4	D	1228	1240	Right-handed alpha
Helix 95	AK5	D	1248	1254	Right-handed alpha
Helix 96	AK6	D	1260	1263	Right-handed 310
Helix 97	AK7	D	1264	1269	Right-handed alpha
Helix 98	AK8	D	1275	1282	Right-handed alpha
Helix 99	AK9	E	33	37	Right-handed 310
Helix 100	AL1	E	39	45	Right-handed alpha
Helix 101	AL2	E	49	71	Right-handed alpha
Helix 102	AL3	E	90	102	Right-handed alpha
Helix 103	AL4	N	19	34	Right-handed alpha
Helix 104	AL5	N	76	86	Right-handed alpha
Helix 105	AL6	N	104	117	Right-handed alpha

There are 42 sheets in PDB entry 8E79. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	47	56	anti-parallel
Strand 4	A	162	163	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	133	147	anti-parallel
Strand 3	A	166	168	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	126	128	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	18	19	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	11	first strand
Strand 2	B	21	26	anti-parallel
Strand 3	B	190	198	anti-parallel
Strand 4	B	171	179	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	100	first strand
Strand 2	B	133	143	anti-parallel
Strand 3	B	48	56	anti-parallel
Strand 4	B	162	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	111	112	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	191	first strand
Strand 2	C	198	205	anti-parallel
Strand 3	C	213	215	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	232	233	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	523	531	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	520	anti-parallel
Strand 3	C	578	580	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	558	562	first strand
Strand 2	C	568	572	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	643	first strand
Strand 2	C	701	703	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	653	anti-parallel
Strand 4	C	695	696	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	895	899	first strand
Strand 2	C	735	738	parallel
Strand 3	C	915	916	anti-parallel
Strand 4	C	717	722	parallel
Strand 5	C	1023	1030	anti-parallel
Strand 6	C	1007	1008	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	756	first strand
Strand 2	C	870	878	anti-parallel
Strand 3	C	847	851	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	805	808	anti-parallel
Strand 3	C	832	834	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	522	524	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1138	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1242	1244	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	35	first strand
Strand 2	D	40	41	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	102	first strand
Strand 2	D	313	319	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	334	336	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	962	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1075	1081	first strand
Strand 2	D	1061	1066	anti-parallel
Strand 3	D	1051	1056	anti-parallel
Strand 4	D	1104	1105	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1271	1274	first strand
Strand 2	E	104	107	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	9	13	first strand
Strand 2	N	68	72	anti-parallel
Strand 3	N	42	43	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	47	52	first strand
Strand 2	N	57	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E79

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E79