Analysis of interatomic Contacts of Structural Units in PDB entry:
8E7F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E7F entry

There is 1 chain in PDB entry 8E7F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 29ALA 642
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 8E7F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 42Right-handed 310
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
50 55Right-handed alpha
Helix 4
AA4
A
56 63Right-handed alpha
Helix 5
AA5
A
82 86Right-handed 310
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
151 158Right-handed alpha
Helix 8
AA8
A
195 216Right-handed alpha
Helix 9
AA9
A
224 235Right-handed alpha
Helix 10
AB1
A
253 261Right-handed 310
Helix 11
AB2
A
262 267Right-handed 310
Helix 12
AB3
A
288 293Right-handed 310
Helix 13
AB4
A
319 325Right-handed alpha
Helix 14
AB5
A
339 358Right-handed alpha
Helix 15
AB6
A
362 374Right-handed alpha
Helix 16
AB7
A
392 397Right-handed alpha
Helix 17
AB8
A
405 409Right-handed 310
Helix 18
AB9
A
410 414Right-handed 310
Helix 19
AC1
A
447 450Right-handed 310
Helix 20
AC2
A
587 594Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8E7F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
137 142parallel
Strand 3
A
71 76parallel
Strand 4
A
160 165parallel
Strand 5
A
238 242parallel
Strand 6
A
269 277parallel
Strand 7
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
137 142parallel
Strand 3
A
71 76parallel
Strand 4
A
160 165parallel
Strand 5
A
238 242parallel
Strand 6
A
269 277parallel
Strand 7
A
295 299parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
107 109anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 312first strand
Strand 2
A
328 337anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
423 427first strand
Strand 2
A
464 468parallel
Strand 3
A
485 487parallel
Strand 4
A
501 504parallel
Strand 5
A
518 521parallel
Strand 6
A
535 544parallel
Strand 7
A
562 570parallel
Strand 8
A
608 610parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 516first strand
Strand 2
A
535 544parallel
Strand 3
A
562 570parallel
Strand 4
A
598 603parallel
Strand 5
A
632 638anti-parallel
Strand 6
A
623 628anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 435first strand
Strand 2
A
443 444anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 455first strand
Strand 2
A
472 475parallel
Strand 3
A
490 494parallel
Strand 4
A
508 512parallel
Strand 5
A
526 529parallel
Strand 6
A
549 554parallel
Strand 7
A
574 579parallel
Strand 8
A
614 616parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 479first strand
Strand 2
A
497 498parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il