Analysis of interatomic Contacts of Structural Units in PDB entry:
8E7J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E7J entry

There are 5 chains in PDB entry 8E7J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12VAL 122
B
 LEU 12VAL 122
C
 LEU 12VAL 122
D
 LEU 12VAL 122
E
 LEU 12VAL 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 8E7J

There are 7 sheets in PDB entry 8E7J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
13 16first strand
Strand 2
B
13 16parallel
Strand 3
A
13 16parallel
Strand 4
C
13 16parallel
Strand 5
E
13 16parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 20first strand
Strand 2
B
19 20parallel
Strand 3
A
19 20parallel
Strand 4
C
19 20parallel
Strand 5
E
19 20parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
25 34first strand
Strand 2
B
25 34parallel
Strand 3
A
25 34parallel
Strand 4
C
25 34parallel
Strand 5
E
25 34parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 80first strand
Strand 2
B
67 80parallel
Strand 3
A
67 80parallel
Strand 4
C
67 80parallel
Strand 5
E
67 80parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 98first strand
Strand 2
B
92 98parallel
Strand 3
A
92 98parallel
Strand 4
C
92 100parallel
Strand 5
E
92 100parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
103 107first strand
Strand 2
B
103 107parallel
Strand 3
A
103 107parallel
Strand 4
C
103 107parallel
Strand 5
E
103 107parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
116 121first strand
Strand 2
B
116 121parallel
Strand 3
A
116 121parallel
Strand 4
C
116 121parallel
Strand 5
E
116 121parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il