Analysis of interatomic Contacts of Structural Units in PDB entry:
8E7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E7M entry

There are 3 chains in PDB entry 8E7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 17	ALA 614
H	GLU 1	LYS 222
L	ASP 1	CYS 214

There are 39 helices in PDB entry 8E7M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	52	Right-handed alpha
Helix 2	AA2	A	55	81	Right-handed alpha
Helix 3	AA3	A	82	83	Right-handed 310
Helix 4	AA4	A	84	88	Right-handed 310
Helix 5	AA5	A	90	102	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	109	130	Right-handed alpha
Helix 8	AA8	A	146	155	Right-handed alpha
Helix 9	AA9	A	157	194	Right-handed alpha
Helix 10	AB1	A	198	205	Right-handed alpha
Helix 11	AB2	A	206	208	Right-handed 310
Helix 12	AB3	A	218	252	Right-handed alpha
Helix 13	AB4	A	265	267	Right-handed 310
Helix 14	AB5	A	275	277	Right-handed 310
Helix 15	AB6	A	278	283	Right-handed alpha
Helix 16	AB7	A	293	300	Right-handed alpha
Helix 17	AB8	A	303	317	Right-handed alpha
Helix 18	AB9	A	324	331	Right-handed alpha
Helix 19	AC1	A	365	385	Right-handed alpha
Helix 20	AC2	A	389	393	Right-handed 310
Helix 21	AC3	A	399	414	Right-handed alpha
Helix 22	AC4	A	414	421	Right-handed alpha
Helix 23	AC5	A	431	447	Right-handed alpha
Helix 24	AC6	A	448	465	Right-handed alpha
Helix 25	AC7	A	469	471	Right-handed 310
Helix 26	AC8	A	472	486	Right-handed alpha
Helix 27	AC9	A	498	502	Right-handed 310
Helix 28	AD1	A	503	508	Right-handed alpha
Helix 29	AD2	A	513	533	Right-handed alpha
Helix 30	AD3	A	538	542	Right-handed 310
Helix 31	AD4	A	547	559	Right-handed alpha
Helix 32	AD5	A	565	575	Right-handed alpha
Helix 33	AD6	A	581	599	Right-handed alpha
Helix 34	AD7	H	28	32	Right-handed 310
Helix 35	AD8	H	87	91	Right-handed 310
Helix 36	AD9	H	164	166	Right-handed 310
Helix 37	AE1	L	79	83	Right-handed 310
Helix 38	AE2	L	121	128	Right-handed alpha
Helix 39	AE3	L	183	188	Right-handed alpha

There are 13 sheets in PDB entry 8E7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	133	first strand
Strand 2	A	141	143	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	263	first strand
Strand 2	A	487	488	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	352	first strand
Strand 2	A	355	359	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	171	173	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	132	first strand
Strand 2	H	143	153	anti-parallel
Strand 3	H	184	193	anti-parallel
Strand 4	H	177	178	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	159	162	first strand
Strand 2	H	202	208	anti-parallel
Strand 3	H	213	219	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	85	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	144	150	anti-parallel
Strand 3	L	191	198	anti-parallel
Strand 4	L	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E7M