Analysis of interatomic Contacts of Structural Units in PDB entry:
8E82

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E82 entry

There are 9 chains in PDB entry 8E82 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASN 226
B	MET 1	SER 237
C	SER 26	SER 1139
D	GLY -1	ALA 1282
E	GLY 28	GLY 109
Z	ASP 33	ARG 154
P	G 110	C 142
Q	G 13	C 45
R	C 11	A 20

There are100 helices in PDB entry 8E82. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	45	Right-handed alpha
Helix 2	AA2	A	72	81	Right-handed alpha
Helix 3	AA3	A	106	110	Right-handed 310
Helix 4	AA4	A	203	222	Right-handed alpha
Helix 5	AA5	B	29	44	Right-handed alpha
Helix 6	AA6	B	72	81	Right-handed alpha
Helix 7	AA7	B	154	158	Right-handed 310
Helix 8	AA8	B	203	224	Right-handed alpha
Helix 9	AA9	C	54	66	Right-handed alpha
Helix 10	AB1	C	67	76	Right-handed alpha
Helix 11	AB2	C	84	94	Right-handed alpha
Helix 12	AB3	C	118	126	Right-handed alpha
Helix 13	AB4	C	233	241	Right-handed alpha
Helix 14	AB5	C	244	252	Right-handed alpha
Helix 15	AB6	C	255	264	Right-handed alpha
Helix 16	AB7	C	270	282	Right-handed alpha
Helix 17	AB8	C	288	300	Right-handed alpha
Helix 18	AB9	C	308	321	Right-handed alpha
Helix 19	AC1	C	334	349	Right-handed alpha
Helix 20	AC2	C	380	404	Right-handed alpha
Helix 21	AC3	C	413	418	Right-handed alpha
Helix 22	AC4	C	420	433	Right-handed alpha
Helix 23	AC5	C	444	452	Right-handed alpha
Helix 24	AC6	C	476	480	Right-handed 310
Helix 25	AC7	C	533	539	Right-handed alpha
Helix 26	AC8	C	596	600	Right-handed 310
Helix 27	AC9	C	601	613	Right-handed alpha
Helix 28	AD1	C	632	637	Right-handed alpha
Helix 29	AD2	C	739	744	Right-handed alpha
Helix 30	AD3	C	778	782	Right-handed 310
Helix 31	AD4	C	854	858	Right-handed 310
Helix 32	AD5	C	921	926	Right-handed alpha
Helix 33	AD6	C	928	943	Right-handed alpha
Helix 34	AD7	C	953	957	Right-handed 310
Helix 35	AD8	C	981	991	Right-handed alpha
Helix 36	AD9	C	1036	1040	Right-handed 310
Helix 37	AE1	C	1069	1080	Right-handed alpha
Helix 38	AE2	C	1081	1091	Right-handed alpha
Helix 39	AE3	C	1095	1108	Right-handed alpha
Helix 40	AE4	C	1118	1132	Right-handed alpha
Helix 41	AE5	D	16	23	Right-handed alpha
Helix 42	AE6	D	48	53	Right-handed alpha
Helix 43	AE7	D	84	90	Right-handed 310
Helix 44	AE8	D	104	107	Right-handed 310
Helix 45	AE9	D	114	119	Right-handed alpha
Helix 46	AF1	D	121	130	Right-handed alpha
Helix 47	AF2	D	141	146	Right-handed alpha
Helix 48	AF3	D	147	187	Right-handed alpha
Helix 49	AF4	D	190	227	Right-handed alpha
Helix 50	AF5	D	237	248	Right-handed alpha
Helix 51	AF6	D	257	267	Right-handed alpha
Helix 52	AF7	D	269	283	Right-handed alpha
Helix 53	AF8	D	286	305	Right-handed alpha
Helix 54	AF9	D	308	311	Right-handed 310
Helix 55	AG1	D	321	325	Right-handed 310
Helix 56	AG2	D	338	361	Right-handed alpha
Helix 57	AG3	D	363	383	Right-handed alpha
Helix 58	AG4	D	401	407	Right-handed 310
Helix 59	AG5	D	411	416	Right-handed alpha
Helix 60	AG6	D	445	452	Right-handed alpha
Helix 61	AG7	D	452	463	Right-handed alpha
Helix 62	AG8	D	468	479	Right-handed alpha
Helix 63	AG9	D	482	491	Right-handed alpha
Helix 64	AH1	D	505	507	Right-handed 310
Helix 65	AH2	D	525	527	Right-handed 310
Helix 66	AH3	D	528	533	Right-handed alpha
Helix 67	AH4	D	548	557	Right-handed alpha
Helix 68	AH5	D	579	589	Right-handed alpha
Helix 69	AH6	D	614	624	Right-handed alpha
Helix 70	AH7	D	643	651	Right-handed alpha
Helix 71	AH8	D	668	675	Right-handed alpha
Helix 72	AH9	D	689	704	Right-handed alpha
Helix 73	AI1	D	705	726	Right-handed alpha
Helix 74	AI2	D	741	762	Right-handed alpha
Helix 75	AI3	D	766	793	Right-handed alpha
Helix 76	AI4	D	797	805	Right-handed alpha
Helix 77	AI5	D	810	819	Right-handed alpha
Helix 78	AI6	D	845	881	Right-handed alpha
Helix 79	AI7	D	945	956	Right-handed alpha
Helix 80	AI8	D	964	968	Right-handed 310
Helix 81	AI9	D	975	980	Right-handed alpha
Helix 82	AJ1	D	994	1005	Right-handed alpha
Helix 83	AJ2	D	1027	1036	Right-handed alpha
Helix 84	AJ3	D	1117	1145	Right-handed alpha
Helix 85	AJ4	D	1150	1162	Right-handed alpha
Helix 86	AJ5	D	1183	1196	Right-handed alpha
Helix 87	AJ6	D	1209	1216	Right-handed alpha
Helix 88	AJ7	D	1219	1227	Right-handed alpha
Helix 89	AJ8	D	1228	1240	Right-handed alpha
Helix 90	AJ9	D	1247	1254	Right-handed alpha
Helix 91	AK1	D	1264	1269	Right-handed alpha
Helix 92	AK2	D	1275	1282	Right-handed alpha
Helix 93	AK3	E	33	37	Right-handed 310
Helix 94	AK4	E	39	47	Right-handed alpha
Helix 95	AK5	E	49	72	Right-handed alpha
Helix 96	AK6	E	90	102	Right-handed alpha
Helix 97	AK7	Z	34	45	Right-handed alpha
Helix 98	AK8	Z	59	73	Right-handed alpha
Helix 99	AK9	Z	116	125	Right-handed alpha
Helix 100	AL1	Z	143	152	Right-handed alpha

There are 44 sheets in PDB entry 8E82. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	171	176	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	15	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	179	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	133	143	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	126	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	15	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	195	198	anti-parallel
Strand 4	B	171	175	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	133	144	anti-parallel
Strand 4	B	47	56	anti-parallel
Strand 5	B	162	163	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	117	118	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	40	first strand
Strand 2	C	972	973	parallel
Strand 3	C	626	627	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	111	112	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	97	first strand
Strand 2	C	103	106	anti-parallel
Strand 3	C	130	141	anti-parallel
Strand 4	C	147	158	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	168	first strand
Strand 2	C	171	175	anti-parallel
Strand 3	C	437	439	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	379	first strand
Strand 2	C	177	181	anti-parallel
Strand 3	C	454	456	parallel
Strand 4	C	497	499	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	186	first strand
Strand 2	C	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	363	364	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	505	506	first strand
Strand 2	C	512	515	anti-parallel
Strand 3	C	530	532	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	519	520	first strand
Strand 2	C	523	524	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	541	542	first strand
Strand 2	C	561	562	anti-parallel
Strand 3	C	568	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	667	671	first strand
Strand 2	C	657	662	anti-parallel
Strand 3	C	648	654	anti-parallel
Strand 4	C	695	696	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	709	first strand
Strand 2	C	712	713	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	717	722	anti-parallel
Strand 4	C	915	917	parallel
Strand 5	C	735	738	anti-parallel
Strand 6	C	895	899	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	885	886	first strand
Strand 2	C	1023	1032	anti-parallel
Strand 3	C	1007	1008	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	756	first strand
Strand 2	C	870	878	anti-parallel
Strand 3	C	846	851	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	759	760	first strand
Strand 2	C	865	867	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	801	803	first strand
Strand 2	C	837	838	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	807	808	first strand
Strand 2	C	832	833	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	945	first strand
Strand 2	C	965	966	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1042	1044	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	521	524	anti-parallel
Strand 8	D	425	432	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	D	420	421	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1136	1137	first strand
Strand 2	D	10	11	anti-parallel
Strand 3	D	1242	1243	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	319	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	334	337	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	611	612	first strand
Strand 2	D	632	637	parallel
Strand 3	D	662	667	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	897	899	first strand
Strand 2	D	960	963	anti-parallel
Strand 3	D	924	925	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1051	1052	first strand
Strand 2	D	1104	1105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1066	first strand
Strand 2	D	1075	1077	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1180	1182	first strand
Strand 2	D	1164	1169	anti-parallel
Strand 3	D	1202	1205	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1273	1274	first strand
Strand 2	E	104	105	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	81	83	first strand
Strand 2	Z	108	113	anti-parallel
Strand 3	Z	48	54	anti-parallel
Strand 4	Z	129	132	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	89	93	first strand
Strand 2	Z	96	100	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E82

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E82