Analysis of interatomic Contacts of Structural Units in PDB entry:
8E83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E83 entry

There are 2 chains in PDB entry 8E83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 30LEU 520
B
 LYS 31LEU 520
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8E83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
47 51Right-handed 310
Helix 2
AA2
A
55 68Right-handed alpha
Helix 3
AA3
A
85 93Right-handed alpha
Helix 4
AA4
A
117 119Right-handed 310
Helix 5
AA5
A
120 125Right-handed alpha
Helix 6
AA6
A
128 137Right-handed alpha
Helix 7
AA7
A
141 147Right-handed alpha
Helix 8
AA8
A
148 170Right-handed alpha
Helix 9
AA9
A
175 193Right-handed alpha
Helix 10
AB1
A
195 215Right-handed alpha
Helix 11
AB2
A
230 260Right-handed alpha
Helix 12
AB3
A
271 279Right-handed alpha
Helix 13
AB4
A
290 303Right-handed alpha
Helix 14
AB5
A
306 323Right-handed alpha
Helix 15
AB6
A
323 338Right-handed alpha
Helix 16
AB7
A
345 351Right-handed 310
Helix 17
AB8
A
352 366Right-handed alpha
Helix 18
AB9
A
397 402Right-handed alpha
Helix 19
AC1
A
414 419Right-handed 310
Helix 20
AC2
A
445 448Right-handed 310
Helix 21
AC3
A
449 456Right-handed alpha
Helix 22
AC4
A
456 469Right-handed alpha
Helix 23
AC5
B
47 51Right-handed 310
Helix 24
AC6
B
55 68Right-handed alpha
Helix 25
AC7
B
85 94Right-handed alpha
Helix 26
AC8
B
117 119Right-handed 310
Helix 27
AC9
B
120 125Right-handed alpha
Helix 28
AD1
B
128 137Right-handed alpha
Helix 29
AD2
B
141 147Right-handed alpha
Helix 30
AD3
B
148 170Right-handed alpha
Helix 31
AD4
B
175 193Right-handed alpha
Helix 32
AD5
B
195 213Right-handed alpha
Helix 33
AD6
B
214 216Right-handed 310
Helix 34
AD7
B
231 239Right-handed alpha
Helix 35
AD8
B
239 260Right-handed alpha
Helix 36
AD9
B
271 279Right-handed alpha
Helix 37
AE1
B
290 303Right-handed alpha
Helix 38
AE2
B
306 323Right-handed alpha
Helix 39
AE3
B
323 338Right-handed alpha
Helix 40
AE4
B
345 351Right-handed 310
Helix 41
AE5
B
352 366Right-handed alpha
Helix 42
AE6
B
397 402Right-handed alpha
Helix 43
AE7
B
414 419Right-handed 310
Helix 44
AE8
B
445 448Right-handed 310
Helix 45
AE9
B
449 456Right-handed alpha
Helix 46
AF1
B
456 469Right-handed alpha
Helix 47
AF2
B
483 487Right-handed 310
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There are 6 sheets in PDB entry 8E83. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
392 396parallel
Strand 4
A
371 376anti-parallel
Strand 5
A
111 113anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 174first strand
Strand 2
A
506 511anti-parallel
Strand 3
A
470 475anti-parallel
Strand 4
A
481 482anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 382first strand
Strand 2
A
385 387anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 75first strand
Strand 2
B
78 83anti-parallel
Strand 3
B
392 396parallel
Strand 4
B
371 376anti-parallel
Strand 5
B
111 113anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 174first strand
Strand 2
B
506 511anti-parallel
Strand 3
B
470 473anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 382first strand
Strand 2
B
385 387anti-parallel
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