Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E8L entry

There are 6 chains in PDB entry 8E8L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	ALA 21	TYR 302
2	TYR 9	GLN 272
3	GLY 1	ALA 235
4	GLY 2	PRO 66
H	LEU 23	SER 148
L	SER 21	LEU 129

There are 27 helices in PDB entry 8E8L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	46	50	Right-handed 310
Helix 2	AA2	1	56	60	Right-handed 310
Helix 3	AA3	1	72	75	Right-handed 310
Helix 4	AA4	1	76	81	Right-handed alpha
Helix 5	AA5	1	115	123	Right-handed alpha
Helix 6	AA6	1	172	177	Right-handed 310
Helix 7	AA7	2	35	37	Right-handed 310
Helix 8	AA8	2	43	47	Right-handed 310
Helix 9	AA9	2	56	60	Right-handed 310
Helix 10	AB1	2	83	87	Right-handed 310
Helix 11	AB2	2	89	99	Right-handed alpha
Helix 12	AB3	2	144	149	Right-handed alpha
Helix 13	AB4	2	150	154	Right-handed 310
Helix 14	AB5	2	186	193	Right-handed 310
Helix 15	AB6	3	42	48	Right-handed alpha
Helix 16	AB7	3	64	69	Right-handed 310
Helix 17	AB8	3	92	97	Right-handed alpha
Helix 18	AB9	3	98	106	Right-handed alpha
Helix 19	AC1	3	144	149	Right-handed alpha
Helix 20	AC2	3	182	186	Right-handed 310
Helix 21	AC3	4	35	39	Right-handed 310
Helix 22	AC4	4	49	54	Right-handed 310
Helix 23	AC5	H	44	51	Right-handed alpha
Helix 24	AC6	H	81	84	Right-handed 310
Helix 25	AC7	H	106	110	Right-handed 310
Helix 26	AC8	L	46	51	Right-handed alpha
Helix 27	AC9	L	100	104	Right-handed 310

There are 18 sheets in PDB entry 8E8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	167	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	51	52	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	167	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	70	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	94	first strand
Strand 2	1	253	268	anti-parallel
Strand 3	1	127	142	anti-parallel
Strand 4	1	192	196	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	94	first strand
Strand 2	1	253	268	anti-parallel
Strand 3	1	127	142	anti-parallel
Strand 4	1	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	106	109	first strand
Strand 2	1	239	244	anti-parallel
Strand 3	1	154	160	anti-parallel
Strand 4	1	182	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	14	18	first strand
Strand 2	2	21	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	33	first strand
Strand 2	2	205	210	parallel
Strand 3	2	102	111	anti-parallel
Strand 4	2	246	260	anti-parallel
Strand 5	2	64	65	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	33	first strand
Strand 2	2	205	210	parallel
Strand 3	2	102	111	anti-parallel
Strand 4	2	246	260	anti-parallel
Strand 5	2	69	72	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	155	156	first strand
Strand 2	2	78	82	anti-parallel
Strand 3	2	227	238	anti-parallel
Strand 4	2	119	128	anti-parallel
Strand 5	2	195	199	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	83	85	first strand
Strand 2	3	189	194	anti-parallel
Strand 3	3	129	135	anti-parallel
Strand 4	3	152	157	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	177	178	first strand
Strand 2	3	109	111	anti-parallel
Strand 3	3	221	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	4	7	first strand
Strand 2	4	26	29	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	24	26	first strand
Strand 2	H	37	43	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	92	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	63	70	anti-parallel
Strand 3	H	53	59	anti-parallel
Strand 4	H	111	126	anti-parallel
Strand 5	H	130	138	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	63	70	anti-parallel
Strand 3	H	53	59	anti-parallel
Strand 4	H	111	126	anti-parallel
Strand 5	H	142	144	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	112	anti-parallel
Strand 4	L	55	59	anti-parallel
Strand 5	L	66	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	112	anti-parallel
Strand 4	L	118	120	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	42	first strand
Strand 2	L	91	97	anti-parallel
Strand 3	L	83	88	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E8L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8L