Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8O

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E8O entry

There are 4 chains in PDB entry 8E8O (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	VAL 556
B	ARG 1	VAL 556
C	ARG 1	VAL 556
D	ARG 1	VAL 556

There are132 helices in PDB entry 8E8O. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed 310
Helix 2	AA2	A	13	17	Right-handed 310
Helix 3	AA3	A	18	26	Right-handed alpha
Helix 4	AA4	A	37	50	Right-handed alpha
Helix 5	AA5	A	54	69	Right-handed alpha
Helix 6	AA6	A	69	80	Right-handed alpha
Helix 7	AA7	A	80	89	Right-handed alpha
Helix 8	AA8	A	91	99	Right-handed alpha
Helix 9	AA9	A	99	104	Right-handed alpha
Helix 10	AB1	A	115	117	Right-handed 310
Helix 11	AB2	A	119	127	Right-handed alpha
Helix 12	AB3	A	149	153	Right-handed 310
Helix 13	AB4	A	154	167	Right-handed alpha
Helix 14	AB5	A	171	173	Right-handed 310
Helix 15	AB6	A	186	192	Right-handed alpha
Helix 16	AB7	A	205	224	Right-handed alpha
Helix 17	AB8	A	235	246	Right-handed alpha
Helix 18	AB9	A	257	276	Right-handed alpha
Helix 19	AC1	A	278	282	Right-handed 310
Helix 20	AC2	A	290	307	Right-handed alpha
Helix 21	AC3	A	310	316	Right-handed alpha
Helix 22	AC4	A	335	340	Right-handed alpha
Helix 23	AC5	A	350	358	Right-handed alpha
Helix 24	AC6	A	374	385	Right-handed alpha
Helix 25	AC7	A	403	411	Right-handed alpha
Helix 26	AC8	A	429	431	Right-handed 310
Helix 27	AC9	A	440	443	Right-handed 310
Helix 28	AD1	A	444	456	Right-handed alpha
Helix 29	AD2	A	461	476	Right-handed alpha
Helix 30	AD3	A	477	483	Right-handed alpha
Helix 31	AD4	A	489	491	Right-handed 310
Helix 32	AD5	A	492	511	Right-handed alpha
Helix 33	AD6	A	522	529	Right-handed alpha
Helix 34	AD7	B	1	6	Right-handed 310
Helix 35	AD8	B	13	17	Right-handed 310
Helix 36	AD9	B	18	26	Right-handed alpha
Helix 37	AE1	B	37	50	Right-handed alpha
Helix 38	AE2	B	54	69	Right-handed alpha
Helix 39	AE3	B	69	80	Right-handed alpha
Helix 40	AE4	B	80	89	Right-handed alpha
Helix 41	AE5	B	91	99	Right-handed alpha
Helix 42	AE6	B	99	104	Right-handed alpha
Helix 43	AE7	B	115	117	Right-handed 310
Helix 44	AE8	B	119	127	Right-handed alpha
Helix 45	AE9	B	149	153	Right-handed 310
Helix 46	AF1	B	154	167	Right-handed alpha
Helix 47	AF2	B	171	173	Right-handed 310
Helix 48	AF3	B	186	192	Right-handed alpha
Helix 49	AF4	B	205	224	Right-handed alpha
Helix 50	AF5	B	235	246	Right-handed alpha
Helix 51	AF6	B	257	276	Right-handed alpha
Helix 52	AF7	B	278	282	Right-handed 310
Helix 53	AF8	B	290	307	Right-handed alpha
Helix 54	AF9	B	310	316	Right-handed alpha
Helix 55	AG1	B	335	340	Right-handed alpha
Helix 56	AG2	B	350	358	Right-handed alpha
Helix 57	AG3	B	374	385	Right-handed alpha
Helix 58	AG4	B	403	411	Right-handed alpha
Helix 59	AG5	B	429	431	Right-handed 310
Helix 60	AG6	B	440	443	Right-handed 310
Helix 61	AG7	B	444	456	Right-handed alpha
Helix 62	AG8	B	461	476	Right-handed alpha
Helix 63	AG9	B	477	483	Right-handed alpha
Helix 64	AH1	B	489	491	Right-handed 310
Helix 65	AH2	B	492	511	Right-handed alpha
Helix 66	AH3	B	522	529	Right-handed alpha
Helix 67	AH4	C	1	6	Right-handed 310
Helix 68	AH5	C	13	17	Right-handed 310
Helix 69	AH6	C	18	26	Right-handed alpha
Helix 70	AH7	C	37	50	Right-handed alpha
Helix 71	AH8	C	54	69	Right-handed alpha
Helix 72	AH9	C	69	80	Right-handed alpha
Helix 73	AI1	C	80	89	Right-handed alpha
Helix 74	AI2	C	91	99	Right-handed alpha
Helix 75	AI3	C	99	104	Right-handed alpha
Helix 76	AI4	C	115	117	Right-handed 310
Helix 77	AI5	C	119	127	Right-handed alpha
Helix 78	AI6	C	149	153	Right-handed 310
Helix 79	AI7	C	154	167	Right-handed alpha
Helix 80	AI8	C	171	173	Right-handed 310
Helix 81	AI9	C	186	192	Right-handed alpha
Helix 82	AJ1	C	205	224	Right-handed alpha
Helix 83	AJ2	C	235	246	Right-handed alpha
Helix 84	AJ3	C	257	276	Right-handed alpha
Helix 85	AJ4	C	278	282	Right-handed 310
Helix 86	AJ5	C	290	307	Right-handed alpha
Helix 87	AJ6	C	310	316	Right-handed alpha
Helix 88	AJ7	C	335	340	Right-handed alpha
Helix 89	AJ8	C	350	358	Right-handed alpha
Helix 90	AJ9	C	374	385	Right-handed alpha
Helix 91	AK1	C	403	411	Right-handed alpha
Helix 92	AK2	C	429	431	Right-handed 310
Helix 93	AK3	C	440	443	Right-handed 310
Helix 94	AK4	C	444	456	Right-handed alpha
Helix 95	AK5	C	461	476	Right-handed alpha
Helix 96	AK6	C	477	483	Right-handed alpha
Helix 97	AK7	C	489	491	Right-handed 310
Helix 98	AK8	C	492	511	Right-handed alpha
Helix 99	AK9	C	522	529	Right-handed alpha
Helix 100	AL1	D	1	6	Right-handed 310
Helix 101	AL2	D	13	17	Right-handed 310
Helix 102	AL3	D	18	26	Right-handed alpha
Helix 103	AL4	D	37	50	Right-handed alpha
Helix 104	AL5	D	54	69	Right-handed alpha
Helix 105	AL6	D	69	80	Right-handed alpha
Helix 106	AL7	D	80	89	Right-handed alpha
Helix 107	AL8	D	91	99	Right-handed alpha
Helix 108	AL9	D	99	104	Right-handed alpha
Helix 109	AM1	D	115	117	Right-handed 310
Helix 110	AM2	D	119	127	Right-handed alpha
Helix 111	AM3	D	149	153	Right-handed 310
Helix 112	AM4	D	154	167	Right-handed alpha
Helix 113	AM5	D	171	173	Right-handed 310
Helix 114	AM6	D	186	192	Right-handed alpha
Helix 115	AM7	D	205	224	Right-handed alpha
Helix 116	AM8	D	235	246	Right-handed alpha
Helix 117	AM9	D	257	276	Right-handed alpha
Helix 118	AN1	D	278	282	Right-handed 310
Helix 119	AN2	D	290	307	Right-handed alpha
Helix 120	AN3	D	310	316	Right-handed alpha
Helix 121	AN4	D	335	340	Right-handed alpha
Helix 122	AN5	D	350	358	Right-handed alpha
Helix 123	AN6	D	374	385	Right-handed alpha
Helix 124	AN7	D	403	411	Right-handed alpha
Helix 125	AN8	D	429	431	Right-handed 310
Helix 126	AN9	D	440	443	Right-handed 310
Helix 127	AO1	D	444	456	Right-handed alpha
Helix 128	AO2	D	461	476	Right-handed alpha
Helix 129	AO3	D	477	483	Right-handed alpha
Helix 130	AO4	D	489	491	Right-handed 310
Helix 131	AO5	D	492	511	Right-handed alpha
Helix 132	AO6	D	522	529	Right-handed alpha

There are 12 sheets in PDB entry 8E8O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	113	first strand
Strand 2	A	175	181	parallel
Strand 3	A	134	138	parallel
Strand 4	A	228	232	parallel
Strand 5	A	252	254	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	284	286	parallel
Strand 3	A	362	365	parallel
Strand 4	A	389	392	parallel
Strand 5	A	416	419	parallel
Strand 6	A	437	438	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	433	434	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	113	first strand
Strand 2	B	175	181	parallel
Strand 3	B	134	138	parallel
Strand 4	B	228	232	parallel
Strand 5	B	252	254	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	284	286	parallel
Strand 3	B	362	365	parallel
Strand 4	B	389	392	parallel
Strand 5	B	416	419	parallel
Strand 6	B	437	438	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	433	434	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	110	113	first strand
Strand 2	C	175	181	parallel
Strand 3	C	134	138	parallel
Strand 4	C	228	232	parallel
Strand 5	C	252	254	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	284	286	parallel
Strand 3	C	362	365	parallel
Strand 4	C	389	392	parallel
Strand 5	C	416	419	parallel
Strand 6	C	437	438	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	427	first strand
Strand 2	C	433	434	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	175	181	parallel
Strand 3	D	134	138	parallel
Strand 4	D	228	232	parallel
Strand 5	D	252	254	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	320	first strand
Strand 2	D	284	286	parallel
Strand 3	D	362	365	parallel
Strand 4	D	389	392	parallel
Strand 5	D	416	419	parallel
Strand 6	D	437	438	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	433	434	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E8O

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8O