Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E8P entry

There are 2 chains in PDB entry 8E8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5THR 212
B
 LYS 5THR 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8E8P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 28Right-handed alpha
Helix 2
AA2
A
39 43Right-handed 310
Helix 3
AA3
A
71 83Right-handed alpha
Helix 4
AA4
A
92 110Right-handed alpha
Helix 5
AA5
A
111 114Right-handed 310
Helix 6
AA6
A
115 121Right-handed alpha
Helix 7
AA7
A
123 150Right-handed alpha
Helix 8
AA8
A
160 176Right-handed alpha
Helix 9
AA9
A
183 195Right-handed alpha
Helix 10
AB1
A
196 200Right-handed 310
Helix 11
AB2
A
203 207Right-handed 310
Helix 12
AB3
B
14 28Right-handed alpha
Helix 13
AB4
B
71 83Right-handed alpha
Helix 14
AB5
B
92 110Right-handed alpha
Helix 15
AB6
B
111 114Right-handed 310
Helix 16
AB7
B
115 120Right-handed alpha
Helix 17
AB8
B
123 150Right-handed alpha
Helix 18
AB9
B
160 176Right-handed alpha
Helix 19
AC1
B
183 195Right-handed alpha
Helix 20
AC2
B
196 200Right-handed 310
Helix 21
AC3
B
203 207Right-handed 310
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There are 2 sheets in PDB entry 8E8P. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
7 10parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
67 70anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 35first strand
Strand 2
B
7 10parallel
Strand 3
B
61 64anti-parallel
Strand 4
B
67 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il