Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E8R entry

There are 6 chains in PDB entry 8E8R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLN 24	TYR 302
2	TYR 9	PHE 270
3	GLY 1	ALA 235
4	GLY 2	LEU 68
H	LEU 23	SER 148
L	SER 21	LEU 129

There are 22 helices in PDB entry 8E8R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	46	50	Right-handed 310
Helix 2	AA2	1	56	60	Right-handed 310
Helix 3	AA3	1	76	81	Right-handed alpha
Helix 4	AA4	1	115	123	Right-handed alpha
Helix 5	AA5	1	172	177	Right-handed 310
Helix 6	AA6	1	222	226	Right-handed 310
Helix 7	AA7	2	35	37	Right-handed 310
Helix 8	AA8	2	56	60	Right-handed 310
Helix 9	AA9	2	83	87	Right-handed 310
Helix 10	AB1	2	89	98	Right-handed alpha
Helix 11	AB2	2	143	148	Right-handed alpha
Helix 12	AB3	2	149	153	Right-handed 310
Helix 13	AB4	2	185	192	Right-handed 310
Helix 14	AB5	3	42	46	Right-handed 310
Helix 15	AB6	3	64	67	Right-handed 310
Helix 16	AB7	3	98	105	Right-handed alpha
Helix 17	AB8	3	144	149	Right-handed alpha
Helix 18	AB9	4	35	39	Right-handed 310
Helix 19	AC1	4	50	55	Right-handed alpha
Helix 20	AC2	H	44	51	Right-handed alpha
Helix 21	AC3	H	106	110	Right-handed 310
Helix 22	AC4	L	100	104	Right-handed 310

There are 18 sheets in PDB entry 8E8R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	168	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	51	52	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	44	45	first strand
Strand 2	3	163	168	anti-parallel
Strand 3	3	114	120	anti-parallel
Strand 4	3	207	216	anti-parallel
Strand 5	3	69	73	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	94	first strand
Strand 2	1	254	269	anti-parallel
Strand 3	1	127	142	anti-parallel
Strand 4	1	192	196	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	85	94	first strand
Strand 2	1	254	269	anti-parallel
Strand 3	1	127	142	anti-parallel
Strand 4	1	205	206	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	105	109	first strand
Strand 2	1	240	245	anti-parallel
Strand 3	1	154	160	anti-parallel
Strand 4	1	182	186	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	14	18	first strand
Strand 2	2	21	25	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	33	first strand
Strand 2	2	204	209	parallel
Strand 3	2	99	112	anti-parallel
Strand 4	2	245	262	anti-parallel
Strand 5	2	64	65	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	32	33	first strand
Strand 2	2	204	209	parallel
Strand 3	2	99	112	anti-parallel
Strand 4	2	245	262	anti-parallel
Strand 5	2	69	72	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	154	155	first strand
Strand 2	2	78	82	anti-parallel
Strand 3	2	226	237	anti-parallel
Strand 4	2	119	128	anti-parallel
Strand 5	2	194	198	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	83	86	first strand
Strand 2	3	189	199	anti-parallel
Strand 3	3	127	135	anti-parallel
Strand 4	3	152	157	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	177	178	first strand
Strand 2	3	109	111	anti-parallel
Strand 3	3	221	222	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	4	7	first strand
Strand 2	4	26	29	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	37	42	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	92	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	63	70	anti-parallel
Strand 3	H	52	59	anti-parallel
Strand 4	H	111	126	anti-parallel
Strand 5	H	130	138	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	63	70	anti-parallel
Strand 3	H	52	59	anti-parallel
Strand 4	H	111	126	anti-parallel
Strand 5	H	142	144	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	113	anti-parallel
Strand 4	L	55	59	anti-parallel
Strand 5	L	66	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	28	31	first strand
Strand 2	L	124	128	parallel
Strand 3	L	105	113	anti-parallel
Strand 4	L	117	120	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	36	42	first strand
Strand 2	L	91	97	anti-parallel
Strand 3	L	83	87	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E8R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8R