Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E8T entry

There are 2 chains in PDB entry 8E8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24THR 450
B
 ALA 24THR 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8E8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
68 76Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
137 139Right-handed 310
Helix 5
AA5
A
152 173Right-handed alpha
Helix 6
AA6
A
177 182Right-handed 310
Helix 7
AA7
A
184 188Right-handed 310
Helix 8
AA8
A
190 207Right-handed alpha
Helix 9
AA9
A
211 215Right-handed 310
Helix 10
AB1
A
225 236Right-handed alpha
Helix 11
AB2
A
244 246Right-handed 310
Helix 12
AB3
A
247 255Right-handed alpha
Helix 13
AB4
A
266 270Right-handed alpha
Helix 14
AB5
A
280 287Right-handed alpha
Helix 15
AB6
A
294 299Right-handed alpha
Helix 16
AB7
A
300 303Right-handed 310
Helix 17
AB8
A
321 329Right-handed alpha
Helix 18
AB9
A
402 406Right-handed 310
Helix 19
AC1
A
407 420Right-handed alpha
Helix 20
AC2
A
422 428Right-handed alpha
Helix 21
AC3
A
434 438Right-handed 310
Helix 22
AC4
A
441 446Right-handed alpha
Helix 23
AC5
B
43 54Right-handed alpha
Helix 24
AC6
B
68 76Right-handed alpha
Helix 25
AC7
B
96 100Right-handed 310
Helix 26
AC8
B
120 129Right-handed alpha
Helix 27
AC9
B
135 139Right-handed 310
Helix 28
AD1
B
152 173Right-handed alpha
Helix 29
AD2
B
177 182Right-handed 310
Helix 30
AD3
B
184 188Right-handed 310
Helix 31
AD4
B
190 207Right-handed alpha
Helix 32
AD5
B
211 215Right-handed 310
Helix 33
AD6
B
225 236Right-handed alpha
Helix 34
AD7
B
244 246Right-handed 310
Helix 35
AD8
B
247 255Right-handed alpha
Helix 36
AD9
B
266 270Right-handed alpha
Helix 37
AE1
B
280 287Right-handed alpha
Helix 38
AE2
B
294 299Right-handed alpha
Helix 39
AE3
B
300 303Right-handed 310
Helix 40
AE4
B
321 329Right-handed alpha
Helix 41
AE5
B
402 406Right-handed 310
Helix 42
AE6
B
407 428Right-handed alpha
Helix 43
AE7
B
434 438Right-handed 310
Helix 44
AE8
B
441 446Right-handed alpha
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There are 6 sheets in PDB entry 8E8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
56 59parallel
Strand 3
A
25 28parallel
Strand 4
A
88 90parallel
Strand 5
A
105 108parallel
Strand 6
A
132 135parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
260 265parallel
Strand 3
A
218 222parallel
Strand 4
A
305 308parallel
Strand 5
A
351 354parallel
Strand 6
A
395 398parallel
Strand 7
A
377 379anti-parallel
Strand 8
A
385 387anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
291 293anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
56 59parallel
Strand 3
B
25 28parallel
Strand 4
B
88 93parallel
Strand 5
B
105 109parallel
Strand 6
B
132 134parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
260 265parallel
Strand 3
B
218 222parallel
Strand 4
B
305 308parallel
Strand 5
B
351 354parallel
Strand 6
B
395 399parallel
Strand 7
B
377 379anti-parallel
Strand 8
B
385 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
B
291 293anti-parallel
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