Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8U

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E8U entry

There are 3 chains in PDB entry 8E8U (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 24	ARG 466
B	ALA 24	ARG 466
C	ALA 24	ASN 452

There are 95 helices in PDB entry 8E8U. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	53	Right-handed alpha
Helix 2	AA2	A	68	76	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	119	129	Right-handed alpha
Helix 5	AA5	A	135	139	Right-handed 310
Helix 6	AA6	A	152	173	Right-handed alpha
Helix 7	AA7	A	177	182	Right-handed 310
Helix 8	AA8	A	184	188	Right-handed 310
Helix 9	AA9	A	190	207	Right-handed alpha
Helix 10	AB1	A	211	215	Right-handed 310
Helix 11	AB2	A	225	236	Right-handed alpha
Helix 12	AB3	A	244	246	Right-handed 310
Helix 13	AB4	A	247	255	Right-handed alpha
Helix 14	AB5	A	266	270	Right-handed alpha
Helix 15	AB6	A	280	287	Right-handed alpha
Helix 16	AB7	A	294	299	Right-handed alpha
Helix 17	AB8	A	300	303	Right-handed 310
Helix 18	AB9	A	321	329	Right-handed alpha
Helix 19	AC1	A	402	406	Right-handed 310
Helix 20	AC2	A	407	428	Right-handed alpha
Helix 21	AC3	A	434	438	Right-handed 310
Helix 22	AC4	A	441	446	Right-handed alpha
Helix 23	AC5	A	456	459	Right-handed 310
Helix 24	AC6	A	460	466	Right-handed alpha
Helix 25	AC7	B	43	53	Right-handed alpha
Helix 26	AC8	B	68	76	Right-handed alpha
Helix 27	AC9	B	119	129	Right-handed alpha
Helix 28	AD1	B	137	139	Right-handed 310
Helix 29	AD2	B	152	173	Right-handed alpha
Helix 30	AD3	B	177	182	Right-handed 310
Helix 31	AD4	B	184	188	Right-handed 310
Helix 32	AD5	B	190	207	Right-handed alpha
Helix 33	AD6	B	211	215	Right-handed 310
Helix 34	AD7	B	225	236	Right-handed alpha
Helix 35	AD8	B	244	246	Right-handed 310
Helix 36	AD9	B	247	255	Right-handed alpha
Helix 37	AE1	B	266	270	Right-handed alpha
Helix 38	AE2	B	280	287	Right-handed alpha
Helix 39	AE3	B	294	299	Right-handed alpha
Helix 40	AE4	B	300	303	Right-handed 310
Helix 41	AE5	B	321	329	Right-handed alpha
Helix 42	AE6	B	402	406	Right-handed 310
Helix 43	AE7	B	407	428	Right-handed alpha
Helix 44	AE8	B	434	438	Right-handed 310
Helix 45	AE9	B	441	446	Right-handed alpha
Helix 46	AF1	B	456	459	Right-handed 310
Helix 47	AF2	B	460	465	Right-handed alpha
Helix 48	AF3	C	43	53	Right-handed alpha
Helix 49	AF4	C	68	76	Right-handed alpha
Helix 50	AF5	C	96	100	Right-handed 310
Helix 51	AF6	C	119	129	Right-handed alpha
Helix 52	AF7	C	137	139	Right-handed 310
Helix 53	AF8	C	152	173	Right-handed alpha
Helix 54	AF9	C	177	182	Right-handed 310
Helix 55	AG1	C	184	188	Right-handed 310
Helix 56	AG2	C	190	207	Right-handed alpha
Helix 57	AG3	C	211	215	Right-handed 310
Helix 58	AG4	C	225	236	Right-handed alpha
Helix 59	AG5	C	244	246	Right-handed 310
Helix 60	AG6	C	247	255	Right-handed alpha
Helix 61	AG7	C	266	270	Right-handed alpha
Helix 62	AG8	C	280	287	Right-handed alpha
Helix 63	AG9	C	294	299	Right-handed alpha
Helix 64	AH1	C	300	303	Right-handed 310
Helix 65	AH2	C	321	329	Right-handed alpha
Helix 66	AH3	C	402	406	Right-handed 310
Helix 67	AH4	C	407	428	Right-handed alpha
Helix 68	AH5	C	434	438	Right-handed 310
Helix 69	AH6	C	441	446	Right-handed alpha
Helix 70	AH7	C	456	459	Right-handed 310
Helix 71	AH8	C	460	465	Right-handed alpha
Helix 72	AH9	D	43	53	Right-handed alpha
Helix 73	AI1	D	68	76	Right-handed alpha
Helix 74	AI2	D	116	118	Right-handed 310
Helix 75	AI3	D	119	129	Right-handed alpha
Helix 76	AI4	D	137	139	Right-handed 310
Helix 77	AI5	D	152	173	Right-handed alpha
Helix 78	AI6	D	177	182	Right-handed 310
Helix 79	AI7	D	184	188	Right-handed 310
Helix 80	AI8	D	190	207	Right-handed alpha
Helix 81	AI9	D	211	215	Right-handed 310
Helix 82	AJ1	D	225	236	Right-handed alpha
Helix 83	AJ2	D	244	246	Right-handed 310
Helix 84	AJ3	D	247	255	Right-handed alpha
Helix 85	AJ4	D	266	270	Right-handed alpha
Helix 86	AJ5	D	280	287	Right-handed alpha
Helix 87	AJ6	D	294	299	Right-handed alpha
Helix 88	AJ7	D	300	303	Right-handed 310
Helix 89	AJ8	D	321	329	Right-handed alpha
Helix 90	AJ9	D	402	406	Right-handed 310
Helix 91	AK1	D	407	428	Right-handed alpha
Helix 92	AK2	D	434	438	Right-handed 310
Helix 93	AK3	D	441	446	Right-handed alpha
Helix 94	AK4	D	456	459	Right-handed 310
Helix 95	AK5	D	460	465	Right-handed alpha

There are 12 sheets in PDB entry 8E8U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	79	first strand
Strand 2	A	56	59	parallel
Strand 3	A	25	28	parallel
Strand 4	A	88	90	parallel
Strand 5	A	105	107	parallel
Strand 6	A	132	134	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	240	242	first strand
Strand 2	A	260	265	parallel
Strand 3	A	218	222	parallel
Strand 4	A	305	308	parallel
Strand 5	A	351	354	parallel
Strand 6	A	395	399	parallel
Strand 7	A	377	379	anti-parallel
Strand 8	A	385	387	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	291	293	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	56	59	parallel
Strand 3	B	25	28	parallel
Strand 4	B	88	90	parallel
Strand 5	B	105	108	parallel
Strand 6	B	132	135	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	242	first strand
Strand 2	B	260	265	parallel
Strand 3	B	218	222	parallel
Strand 4	B	305	308	parallel
Strand 5	B	351	354	parallel
Strand 6	B	395	399	parallel
Strand 7	B	377	379	anti-parallel
Strand 8	B	385	387	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	291	293	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	C	56	59	parallel
Strand 3	C	25	28	parallel
Strand 4	C	88	90	parallel
Strand 5	C	105	108	parallel
Strand 6	C	132	135	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	240	242	first strand
Strand 2	C	260	265	parallel
Strand 3	C	217	222	parallel
Strand 4	C	305	308	parallel
Strand 5	C	351	354	parallel
Strand 6	C	395	398	parallel
Strand 7	C	377	379	anti-parallel
Strand 8	C	385	387	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	291	293	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	56	59	parallel
Strand 3	D	25	28	parallel
Strand 4	D	88	90	parallel
Strand 5	D	105	108	parallel
Strand 6	D	132	135	parallel
Strand 7	D	448	450	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	240	242	first strand
Strand 2	D	260	265	parallel
Strand 3	D	218	222	parallel
Strand 4	D	305	308	parallel
Strand 5	D	351	354	parallel
Strand 6	D	395	398	parallel
Strand 7	D	377	379	anti-parallel
Strand 8	D	385	387	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	291	293	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E8U

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8U