Analysis of interatomic Contacts of Structural Units in PDB entry:
8E8V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E8V entry

There are 4 chains in PDB entry 8E8V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 24THR 450
B
 ALA 24THR 450
C
 ALA 24THR 450
D
 ALA 24GLU 81
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 8E8V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 53Right-handed alpha
Helix 2
AA2
A
68 75Right-handed alpha
Helix 3
AA3
A
96 100Right-handed 310
Helix 4
AA4
A
125 130Right-handed alpha
Helix 5
AA5
A
137 139Right-handed 310
Helix 6
AA6
A
152 173Right-handed alpha
Helix 7
AA7
A
177 182Right-handed 310
Helix 8
AA8
A
184 188Right-handed 310
Helix 9
AA9
A
190 207Right-handed alpha
Helix 10
AB1
A
211 215Right-handed 310
Helix 11
AB2
A
225 236Right-handed alpha
Helix 12
AB3
A
244 246Right-handed 310
Helix 13
AB4
A
247 255Right-handed alpha
Helix 14
AB5
A
266 270Right-handed alpha
Helix 15
AB6
A
280 287Right-handed alpha
Helix 16
AB7
A
294 299Right-handed alpha
Helix 17
AB8
A
300 303Right-handed 310
Helix 18
AB9
A
321 329Right-handed alpha
Helix 19
AC1
A
403 406Right-handed 310
Helix 20
AC2
A
407 420Right-handed alpha
Helix 21
AC3
A
422 428Right-handed alpha
Helix 22
AC4
A
441 448Right-handed alpha
Helix 23
AC5
B
43 53Right-handed alpha
Helix 24
AC6
B
68 75Right-handed alpha
Helix 25
AC7
B
124 129Right-handed alpha
Helix 26
AC8
B
137 139Right-handed 310
Helix 27
AC9
B
152 173Right-handed alpha
Helix 28
AD1
B
177 182Right-handed 310
Helix 29
AD2
B
184 188Right-handed 310
Helix 30
AD3
B
190 207Right-handed alpha
Helix 31
AD4
B
211 215Right-handed 310
Helix 32
AD5
B
225 236Right-handed alpha
Helix 33
AD6
B
244 246Right-handed 310
Helix 34
AD7
B
247 255Right-handed alpha
Helix 35
AD8
B
266 269Right-handed 310
Helix 36
AD9
B
280 287Right-handed alpha
Helix 37
AE1
B
294 299Right-handed alpha
Helix 38
AE2
B
300 303Right-handed 310
Helix 39
AE3
B
321 329Right-handed alpha
Helix 40
AE4
B
356 360Right-handed 310
Helix 41
AE5
B
402 406Right-handed 310
Helix 42
AE6
B
407 420Right-handed alpha
Helix 43
AE7
B
422 428Right-handed alpha
Helix 44
AE8
B
441 447Right-handed alpha
Helix 45
AE9
C
43 54Right-handed alpha
Helix 46
AF1
C
68 75Right-handed alpha
Helix 47
AF2
C
124 129Right-handed alpha
Helix 48
AF3
C
137 139Right-handed 310
Helix 49
AF4
C
152 173Right-handed alpha
Helix 50
AF5
C
177 182Right-handed 310
Helix 51
AF6
C
184 188Right-handed 310
Helix 52
AF7
C
190 207Right-handed alpha
Helix 53
AF8
C
211 215Right-handed 310
Helix 54
AF9
C
225 236Right-handed alpha
Helix 55
AG1
C
244 246Right-handed 310
Helix 56
AG2
C
247 255Right-handed alpha
Helix 57
AG3
C
266 269Right-handed 310
Helix 58
AG4
C
280 287Right-handed alpha
Helix 59
AG5
C
294 299Right-handed alpha
Helix 60
AG6
C
300 303Right-handed 310
Helix 61
AG7
C
321 329Right-handed alpha
Helix 62
AG8
C
403 406Right-handed 310
Helix 63
AG9
C
407 420Right-handed alpha
Helix 64
AH1
C
422 428Right-handed alpha
Helix 65
AH2
C
434 438Right-handed 310
Helix 66
AH3
C
441 448Right-handed alpha
Helix 67
AH4
D
43 53Right-handed alpha
Helix 68
AH5
D
68 75Right-handed alpha
Helix 69
AH6
D
96 100Right-handed 310
Helix 70
AH7
D
137 139Right-handed 310
Helix 71
AH8
D
152 173Right-handed alpha
Helix 72
AH9
D
177 182Right-handed 310
Helix 73
AI1
D
184 188Right-handed 310
Helix 74
AI2
D
190 207Right-handed alpha
Helix 75
AI3
D
211 215Right-handed 310
Helix 76
AI4
D
225 236Right-handed alpha
Helix 77
AI5
D
244 246Right-handed 310
Helix 78
AI6
D
247 255Right-handed alpha
Helix 79
AI7
D
266 270Right-handed alpha
Helix 80
AI8
D
280 287Right-handed alpha
Helix 81
AI9
D
294 299Right-handed alpha
Helix 82
AJ1
D
300 303Right-handed 310
Helix 83
AJ2
D
321 329Right-handed alpha
Helix 84
AJ3
D
402 406Right-handed 310
Helix 85
AJ4
D
407 420Right-handed alpha
Helix 86
AJ5
D
422 428Right-handed alpha
Helix 87
AJ6
D
441 447Right-handed alpha
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There are 12 sheets in PDB entry 8E8V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 79first strand
Strand 2
A
56 59parallel
Strand 3
A
25 28parallel
Strand 4
A
88 93parallel
Strand 5
A
105 109parallel
Strand 6
A
132 135parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
260 264parallel
Strand 3
A
218 222parallel
Strand 4
A
305 308parallel
Strand 5
A
351 354parallel
Strand 6
A
395 398parallel
Strand 7
A
376 379anti-parallel
Strand 8
A
385 386anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
271 273first strand
Strand 2
A
291 293anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
56 59parallel
Strand 3
B
25 28parallel
Strand 4
B
88 93parallel
Strand 5
B
105 109parallel
Strand 6
B
132 135parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
260 265parallel
Strand 3
B
218 222parallel
Strand 4
B
305 308parallel
Strand 5
B
351 354parallel
Strand 6
B
395 398parallel
Strand 7
B
376 379anti-parallel
Strand 8
B
385 387anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
271 273first strand
Strand 2
B
291 293anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 79first strand
Strand 2
C
56 59parallel
Strand 3
C
25 28parallel
Strand 4
C
88 93parallel
Strand 5
C
105 109parallel
Strand 6
C
132 135parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 242first strand
Strand 2
C
260 265parallel
Strand 3
C
218 222parallel
Strand 4
C
305 308parallel
Strand 5
C
351 354parallel
Strand 6
C
395 398parallel
Strand 7
C
376 379anti-parallel
Strand 8
C
385 387anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
271 273first strand
Strand 2
C
291 293anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 79first strand
Strand 2
D
56 59parallel
Strand 3
D
25 28parallel
Strand 4
D
88 90parallel
Strand 5
D
105 108parallel
Strand 6
D
132 135parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
240 242first strand
Strand 2
D
260 265parallel
Strand 3
D
218 222parallel
Strand 4
D
305 308parallel
Strand 5
D
351 354parallel
Strand 6
D
395 398parallel
Strand 7
D
376 379anti-parallel
Strand 8
D
385 387anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
271 273first strand
Strand 2
D
291 293anti-parallel
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