Analysis of interatomic Contacts of Structural Units in PDB entry:
8E90


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8E90 entry

There are 2 chains in PDB entry 8E90 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 583
B
 GLY 2SER 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 53 helices in PDB entry 8E90. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed alpha
Helix 2
AA2
A
15 28Right-handed alpha
Helix 3
AA3
A
33 49Right-handed alpha
Helix 4
AA4
A
82 101Right-handed alpha
Helix 5
AA5
A
102 106Right-handed 310
Helix 6
AA6
A
108 112Right-handed 310
Helix 7
AA7
A
114 129Right-handed alpha
Helix 8
AA8
A
142 150Right-handed alpha
Helix 9
AA9
A
153 168Right-handed alpha
Helix 10
AB1
A
187 191Right-handed 310
Helix 11
AB2
A
211 217Right-handed alpha
Helix 12
AB3
A
219 226Right-handed 310
Helix 13
AB4
A
231 242Right-handed alpha
Helix 14
AB5
A
253 270Right-handed alpha
Helix 15
AB6
A
276 290Right-handed alpha
Helix 16
AB7
A
297 313Right-handed alpha
Helix 17
AB8
A
318 331Right-handed alpha
Helix 18
AB9
A
333 349Right-handed alpha
Helix 19
AC1
A
357 370Right-handed alpha
Helix 20
AC2
A
370 386Right-handed alpha
Helix 21
AC3
A
402 405Right-handed 310
Helix 22
AC4
A
406 425Right-handed alpha
Helix 23
AC5
A
433 435Right-handed 310
Helix 24
AC6
A
436 446Right-handed alpha
Helix 25
AC7
A
448 453Right-handed alpha
Helix 26
AC8
A
555 560Right-handed alpha
Helix 27
AC9
A
561 567Right-handed alpha
Helix 28
AD1
A
571 580Right-handed alpha
Helix 29
AD2
B
4 9Right-handed alpha
Helix 30
AD3
B
15 28Right-handed alpha
Helix 31
AD4
B
33 49Right-handed alpha
Helix 32
AD5
B
82 101Right-handed alpha
Helix 33
AD6
B
102 106Right-handed 310
Helix 34
AD7
B
114 129Right-handed alpha
Helix 35
AD8
B
142 150Right-handed alpha
Helix 36
AD9
B
153 168Right-handed alpha
Helix 37
AE1
B
187 191Right-handed 310
Helix 38
AE2
B
211 217Right-handed alpha
Helix 39
AE3
B
219 226Right-handed 310
Helix 40
AE4
B
231 242Right-handed alpha
Helix 41
AE5
B
253 270Right-handed alpha
Helix 42
AE6
B
276 290Right-handed alpha
Helix 43
AE7
B
297 313Right-handed alpha
Helix 44
AE8
B
318 331Right-handed alpha
Helix 45
AE9
B
333 349Right-handed alpha
Helix 46
AF1
B
357 370Right-handed alpha
Helix 47
AF2
B
370 385Right-handed alpha
Helix 48
AF3
B
402 405Right-handed 310
Helix 49
AF4
B
406 425Right-handed alpha
Helix 50
AF5
B
433 446Right-handed alpha
Helix 51
AF6
B
448 453Right-handed alpha
Helix 52
AF7
B
555 567Right-handed alpha
Helix 53
AF8
B
571 581Right-handed alpha
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There are 4 sheets in PDB entry 8E90. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
182 186anti-parallel
Strand 3
A
174 177anti-parallel
Strand 4
A
228 229anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
251 252anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 194first strand
Strand 2
B
182 186anti-parallel
Strand 3
B
174 177anti-parallel
Strand 4
B
228 229anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 248first strand
Strand 2
B
251 252anti-parallel
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