Analysis of interatomic Contacts of Structural Units in PDB entry:
8E93

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E93 entry

There are 4 chains in PDB entry 8E93 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	LYS 841
B	THR 31	TRP 841
C	MET 394	CYS 798
D	SER 400	TRP 841

There are 80 helices in PDB entry 8E93. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	54	Right-handed alpha
Helix 2	AA2	A	70	84	Right-handed alpha
Helix 3	AA3	A	104	113	Right-handed alpha
Helix 4	AA4	A	126	130	Right-handed 310
Helix 5	AA5	A	143	146	Right-handed 310
Helix 6	AA6	A	147	159	Right-handed alpha
Helix 7	AA7	A	170	186	Right-handed alpha
Helix 8	AA8	A	204	209	Right-handed alpha
Helix 9	AA9	A	210	212	Right-handed 310
Helix 10	AB1	A	224	236	Right-handed alpha
Helix 11	AB2	A	250	254	Right-handed 310
Helix 12	AB3	A	278	297	Right-handed alpha
Helix 13	AB4	A	317	327	Right-handed alpha
Helix 14	AB5	A	458	471	Right-handed alpha
Helix 15	AB6	A	491	494	Right-handed 310
Helix 16	AB7	A	502	507	Right-handed alpha
Helix 17	AB8	A	520	525	Right-handed alpha
Helix 18	AB9	A	564	582	Right-handed alpha
Helix 19	AC1	A	603	614	Right-handed alpha
Helix 20	AC2	A	629	657	Right-handed alpha
Helix 21	AC3	A	669	674	Right-handed alpha
Helix 22	AC4	A	687	696	Right-handed alpha
Helix 23	AC5	A	700	707	Right-handed alpha
Helix 24	AC6	A	713	723	Right-handed alpha
Helix 25	AC7	A	733	744	Right-handed alpha
Helix 26	AC8	A	766	769	Right-handed 310
Helix 27	AC9	A	770	783	Right-handed alpha
Helix 28	AD1	A	783	793	Right-handed alpha
Helix 29	AD2	A	811	841	Right-handed alpha
Helix 30	AD3	B	42	49	Right-handed alpha
Helix 31	AD4	B	73	86	Right-handed alpha
Helix 32	AD5	B	103	116	Right-handed alpha
Helix 33	AD6	B	124	128	Right-handed 310
Helix 34	AD7	B	145	160	Right-handed alpha
Helix 35	AD8	B	174	186	Right-handed alpha
Helix 36	AD9	B	208	218	Right-handed alpha
Helix 37	AE1	B	229	243	Right-handed alpha
Helix 38	AE2	B	278	282	Right-handed 310
Helix 39	AE3	B	284	307	Right-handed alpha
Helix 40	AE4	B	327	335	Right-handed alpha
Helix 41	AE5	B	456	470	Right-handed alpha
Helix 42	AE6	B	492	500	Right-handed alpha
Helix 43	AE7	B	513	520	Right-handed alpha
Helix 44	AE8	B	624	652	Right-handed alpha
Helix 45	AE9	B	665	670	Right-handed alpha
Helix 46	AF1	B	687	696	Right-handed alpha
Helix 47	AF2	B	696	702	Right-handed alpha
Helix 48	AF3	B	710	720	Right-handed alpha
Helix 49	AF4	B	730	737	Right-handed alpha
Helix 50	AF5	B	769	782	Right-handed alpha
Helix 51	AF6	B	784	794	Right-handed alpha
Helix 52	AF7	B	814	840	Right-handed alpha
Helix 53	AF8	C	458	471	Right-handed alpha
Helix 54	AF9	C	499	507	Right-handed alpha
Helix 55	AG1	C	520	525	Right-handed alpha
Helix 56	AG2	C	549	554	Right-handed alpha
Helix 57	AG3	C	561	582	Right-handed alpha
Helix 58	AG4	C	603	614	Right-handed alpha
Helix 59	AG5	C	626	658	Right-handed alpha
Helix 60	AG6	C	687	696	Right-handed alpha
Helix 61	AG7	C	699	707	Right-handed alpha
Helix 62	AG8	C	708	710	Right-handed 310
Helix 63	AG9	C	713	722	Right-handed alpha
Helix 64	AH1	C	733	744	Right-handed alpha
Helix 65	AH2	C	768	782	Right-handed alpha
Helix 66	AH3	C	783	793	Right-handed alpha
Helix 67	AH4	D	457	470	Right-handed alpha
Helix 68	AH5	D	493	500	Right-handed alpha
Helix 69	AH6	D	513	518	Right-handed alpha
Helix 70	AH7	D	552	576	Right-handed alpha
Helix 71	AH8	D	598	611	Right-handed alpha
Helix 72	AH9	D	626	654	Right-handed alpha
Helix 73	AI1	D	686	692	Right-handed alpha
Helix 74	AI2	D	696	701	Right-handed alpha
Helix 75	AI3	D	702	706	Right-handed 310
Helix 76	AI4	D	711	721	Right-handed alpha
Helix 77	AI5	D	730	740	Right-handed alpha
Helix 78	AI6	D	769	783	Right-handed alpha
Helix 79	AI7	D	784	792	Right-handed alpha
Helix 80	AI8	D	811	838	Right-handed alpha

There are 29 sheets in PDB entry 8E93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	59	60	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	64	66	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	118	120	parallel
Strand 3	A	138	139	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	163	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	271	first strand
Strand 2	A	350	353	anti-parallel
Strand 3	A	367	368	anti-parallel
Strand 4	A	371	372	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	360	361	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	478	first strand
Strand 2	A	397	402	parallel
Strand 3	A	512	513	parallel
Strand 4	A	761	763	anti-parallel
Strand 5	A	527	529	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	409	412	first strand
Strand 2	A	454	457	anti-parallel
Strand 3	A	434	435	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	489	first strand
Strand 2	A	496	499	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	536	first strand
Strand 2	A	756	757	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	746	748	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	68	first strand
Strand 2	B	32	36	parallel
Strand 3	B	93	95	parallel
Strand 4	B	119	121	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	200	first strand
Strand 2	B	164	169	parallel
Strand 3	B	223	227	parallel
Strand 4	B	251	253	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	359	363	anti-parallel
Strand 3	B	369	376	anti-parallel
Strand 4	B	379	380	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	343	344	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	407	first strand
Strand 2	B	475	477	parallel
Strand 3	B	434	435	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	415	417	first strand
Strand 2	B	453	455	anti-parallel
Strand 3	B	431	432	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	490	491	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	505	506	first strand
Strand 2	B	762	763	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	729	first strand
Strand 2	B	528	536	anti-parallel
Strand 3	B	745	747	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	729	first strand
Strand 2	B	528	536	anti-parallel
Strand 3	B	754	758	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	478	first strand
Strand 2	C	400	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	409	412	first strand
Strand 2	C	453	457	anti-parallel
Strand 3	C	434	436	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	489	first strand
Strand 2	C	496	498	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	535	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	535	543	anti-parallel
Strand 4	C	755	757	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	473	477	first strand
Strand 2	D	403	407	parallel
Strand 3	D	505	506	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	417	first strand
Strand 2	D	452	456	anti-parallel
Strand 3	D	431	433	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	729	first strand
Strand 2	D	529	535	anti-parallel
Strand 3	D	754	757	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E93

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E93