Analysis of interatomic Contacts of Structural Units in PDB entry:
8E96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8E96 entry

There are 4 chains in PDB entry 8E96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	CYS 798
B	ALA 48	VAL 862
C	LYS 25	GLN 796
D	ALA 48	VAL 862

There are109 helices in PDB entry 8E96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	53	Right-handed alpha
Helix 2	AA2	A	73	81	Right-handed alpha
Helix 3	AA3	A	82	85	Right-handed 310
Helix 4	AA4	A	103	111	Right-handed alpha
Helix 5	AA5	A	112	115	Right-handed 310
Helix 6	AA6	A	146	158	Right-handed alpha
Helix 7	AA7	A	170	185	Right-handed alpha
Helix 8	AA8	A	186	188	Right-handed 310
Helix 9	AA9	A	205	212	Right-handed 310
Helix 10	AB1	A	224	238	Right-handed alpha
Helix 11	AB2	A	256	262	Right-handed 310
Helix 12	AB3	A	276	296	Right-handed alpha
Helix 13	AB4	A	318	326	Right-handed alpha
Helix 14	AB5	A	459	471	Right-handed alpha
Helix 15	AB6	A	501	506	Right-handed alpha
Helix 16	AB7	A	520	525	Right-handed alpha
Helix 17	AB8	A	561	582	Right-handed alpha
Helix 18	AB9	A	604	615	Right-handed alpha
Helix 19	AC1	A	627	655	Right-handed alpha
Helix 20	AC2	A	669	674	Right-handed alpha
Helix 21	AC3	A	687	695	Right-handed alpha
Helix 22	AC4	A	699	704	Right-handed alpha
Helix 23	AC5	A	713	723	Right-handed alpha
Helix 24	AC6	A	735	743	Right-handed alpha
Helix 25	AC7	A	768	782	Right-handed alpha
Helix 26	AC8	A	784	792	Right-handed alpha
Helix 27	AC9	B	59	65	Right-handed alpha
Helix 28	AD1	B	68	77	Right-handed alpha
Helix 29	AD2	B	98	108	Right-handed alpha
Helix 30	AD3	B	126	138	Right-handed alpha
Helix 31	AD4	B	167	172	Right-handed alpha
Helix 32	AD5	B	173	182	Right-handed alpha
Helix 33	AD6	B	196	209	Right-handed alpha
Helix 34	AD7	B	228	237	Right-handed alpha
Helix 35	AD8	B	252	264	Right-handed alpha
Helix 36	AD9	B	311	314	Right-handed 310
Helix 37	AE1	B	315	330	Right-handed alpha
Helix 38	AE2	B	331	338	Right-handed alpha
Helix 39	AE3	B	358	364	Right-handed alpha
Helix 40	AE4	B	486	499	Right-handed alpha
Helix 41	AE5	B	523	530	Right-handed alpha
Helix 42	AE6	B	543	548	Right-handed alpha
Helix 43	AE7	B	634	641	Right-handed alpha
Helix 44	AE8	B	655	681	Right-handed alpha
Helix 45	AE9	B	695	700	Right-handed alpha
Helix 46	AF1	B	700	705	Right-handed alpha
Helix 47	AF2	B	717	724	Right-handed alpha
Helix 48	AF3	B	726	734	Right-handed alpha
Helix 49	AF4	B	742	751	Right-handed alpha
Helix 50	AF5	B	762	767	Right-handed alpha
Helix 51	AF6	B	799	813	Right-handed alpha
Helix 52	AF7	B	819	824	Right-handed alpha
Helix 53	AF8	B	848	862	Right-handed alpha
Helix 54	AF9	C	35	54	Right-handed alpha
Helix 55	AG1	C	71	82	Right-handed alpha
Helix 56	AG2	C	83	85	Right-handed 310
Helix 57	AG3	C	103	111	Right-handed alpha
Helix 58	AG4	C	112	115	Right-handed 310
Helix 59	AG5	C	143	146	Right-handed 310
Helix 60	AG6	C	147	158	Right-handed alpha
Helix 61	AG7	C	170	185	Right-handed alpha
Helix 62	AG8	C	205	212	Right-handed alpha
Helix 63	AG9	C	226	238	Right-handed alpha
Helix 64	AH1	C	251	260	Right-handed 310
Helix 65	AH2	C	277	294	Right-handed alpha
Helix 66	AH3	C	318	320	Right-handed 310
Helix 67	AH4	C	321	327	Right-handed alpha
Helix 68	AH5	C	459	470	Right-handed alpha
Helix 69	AH6	C	501	506	Right-handed alpha
Helix 70	AH7	C	520	525	Right-handed alpha
Helix 71	AH8	C	560	575	Right-handed alpha
Helix 72	AH9	C	603	607	Right-handed 310
Helix 73	AI1	C	608	615	Right-handed alpha
Helix 74	AI2	C	627	655	Right-handed alpha
Helix 75	AI3	C	669	674	Right-handed alpha
Helix 76	AI4	C	687	693	Right-handed alpha
Helix 77	AI5	C	694	695	Right-handed 310
Helix 78	AI6	C	696	700	Right-handed 310
Helix 79	AI7	C	713	723	Right-handed alpha
Helix 80	AI8	C	733	744	Right-handed alpha
Helix 81	AI9	C	768	782	Right-handed alpha
Helix 82	AJ1	C	783	793	Right-handed alpha
Helix 83	AJ2	D	59	64	Right-handed 310
Helix 84	AJ3	D	68	73	Right-handed alpha
Helix 85	AJ4	D	97	110	Right-handed alpha
Helix 86	AJ5	D	123	125	Right-handed 310
Helix 87	AJ6	D	126	136	Right-handed alpha
Helix 88	AJ7	D	146	150	Right-handed 310
Helix 89	AJ8	D	172	177	Right-handed alpha
Helix 90	AJ9	D	196	209	Right-handed alpha
Helix 91	AK1	D	228	237	Right-handed alpha
Helix 92	AK2	D	252	263	Right-handed alpha
Helix 93	AK3	D	315	338	Right-handed alpha
Helix 94	AK4	D	357	364	Right-handed 310
Helix 95	AK5	D	486	500	Right-handed alpha
Helix 96	AK6	D	522	530	Right-handed alpha
Helix 97	AK7	D	543	548	Right-handed alpha
Helix 98	AK8	D	653	677	Right-handed alpha
Helix 99	AK9	D	678	680	Right-handed 310
Helix 100	AL1	D	695	700	Right-handed alpha
Helix 101	AL2	D	717	726	Right-handed alpha
Helix 102	AL3	D	726	734	Right-handed alpha
Helix 103	AL4	D	735	737	Right-handed 310
Helix 104	AL5	D	740	750	Right-handed alpha
Helix 105	AL6	D	759	769	Right-handed alpha
Helix 106	AL7	D	770	773	Right-handed 310
Helix 107	AL8	D	799	813	Right-handed alpha
Helix 108	AL9	D	814	824	Right-handed alpha
Helix 109	AM1	D	847	862	Right-handed alpha

There are 34 sheets in PDB entry 8E96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	26	31	parallel
Strand 3	A	87	92	parallel
Strand 4	A	118	120	parallel
Strand 5	A	138	139	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	196	first strand
Strand 2	A	164	167	parallel
Strand 3	A	218	222	parallel
Strand 4	A	246	248	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	271	first strand
Strand 2	A	351	357	anti-parallel
Strand 3	A	360	367	anti-parallel
Strand 4	A	372	373	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	413	first strand
Strand 2	A	453	456	anti-parallel
Strand 3	A	434	437	anti-parallel
Strand 4	A	473	478	parallel
Strand 5	A	397	402	parallel
Strand 6	A	512	513	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	528	first strand
Strand 2	A	762	763	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	682	first strand
Strand 2	A	728	732	parallel
Strand 3	A	538	543	anti-parallel
Strand 4	A	746	748	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	91	first strand
Strand 2	B	54	58	parallel
Strand 3	B	115	117	parallel
Strand 4	B	141	143	parallel
Strand 5	B	162	163	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	222	first strand
Strand 2	B	186	191	parallel
Strand 3	B	243	247	parallel
Strand 4	B	271	274	parallel
Strand 5	B	304	309	parallel
Strand 6	B	387	390	anti-parallel
Strand 7	B	400	405	anti-parallel
Strand 8	B	408	411	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	372	374	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	502	507	first strand
Strand 2	B	431	436	parallel
Strand 3	B	535	536	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	444	446	first strand
Strand 2	B	483	485	anti-parallel
Strand 3	B	460	461	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	517	first strand
Strand 2	B	520	522	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	551	552	first strand
Strand 2	B	792	793	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	B	558	566	anti-parallel
Strand 3	B	775	777	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	756	758	first strand
Strand 2	B	558	566	anti-parallel
Strand 3	B	784	788	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	28	33	parallel
Strand 3	C	87	93	parallel
Strand 4	C	118	121	parallel
Strand 5	C	137	139	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	197	first strand
Strand 2	C	165	168	parallel
Strand 3	C	220	221	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	268	first strand
Strand 2	C	354	357	anti-parallel
Strand 3	C	360	363	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	478	first strand
Strand 2	C	397	402	parallel
Strand 3	C	512	513	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	413	first strand
Strand 2	C	451	455	anti-parallel
Strand 3	C	437	438	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	488	first strand
Strand 2	C	497	498	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	527	528	first strand
Strand 2	C	762	763	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	536	first strand
Strand 2	C	756	757	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	728	732	parallel
Strand 3	C	538	543	anti-parallel
Strand 4	C	746	749	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	83	84	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	54	55	parallel
Strand 3	D	115	117	parallel
Strand 4	D	141	143	parallel
Strand 5	D	161	162	parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	222	first strand
Strand 2	D	186	191	parallel
Strand 3	D	243	247	parallel
Strand 4	D	271	274	parallel
Strand 5	D	304	308	parallel
Strand 6	D	388	393	anti-parallel
Strand 7	D	397	400	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	369	first strand
Strand 2	D	372	373	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	402	405	first strand
Strand 2	D	408	411	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	434	435	first strand
Strand 2	D	535	536	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	444	447	first strand
Strand 2	D	482	485	anti-parallel
Strand 3	D	460	461	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	516	517	first strand
Strand 2	D	520	521	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	758	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	775	777	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	756	758	first strand
Strand 2	D	558	566	anti-parallel
Strand 3	D	784	788	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8E96

Analysis of interatomic Contacts of Structural Units in PDB entry:
8E96